PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g083490.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ARR-B

Protein Properties

Length: 808aa MW: 91695.4 Da PI: 6.8047

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g083490.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	49.3	1.1e-15	229	278	5	55
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 Wt+e H +F+ a++ L G+++ Pk+il++m+ + Lt +v+SHLQkY++ Csa05g083490.1 229 LWTNERHMKFLAAISIL-GEKEFRPKSILRIMNDPNLTHLQVASHLQKYKT 278 6**************.9999*************************87 PP
2	Response_reg	25.1	8.8e-10	15	122	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+++ + + l+++le+ +v ++d ++al ++++++ ++l++ iemp++d + +l+ + +++ +p ++ + + + + l G Csa05g083490.1 15 VLLIEHDTASVASLTSMLEQFSK-RVISMDAVSKALSMIEKQKkdIGLVIANIEMPQLDSHSFLTALLQKN--IPLTLINPETKTKKPSDLLTNG 106 799999999999*****8888.999999999999999666656******************8866..99999999999999**** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a+ l Kp+++ ++ + Csa05g083490.1 107 ASFTLNKPISEIDIKN 122 *******9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	1.42E-10	12	134	IPR011006	CheY-like superfamily
PROSITE profile	PS50110	20.462	14	128	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.7E-7	15	123	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	6.0E-13	15	145	No hit	No description
CDD	cd00156	1.71E-5	16	128	No hit	No description
SuperFamily	SSF46689	1.43E-13	225	281	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.8E-17	227	280	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-15	228	278	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence Send to blast
MVGTITPQNV DDIFVLLIEH DTASVASLTS MLEQFSKRVI SMDAVSKALS MIEKQKKDIG 60 LVIANIEMPQ LDSHSFLTAL LQKNIPLTLI NPETKTKKPS DLLTNGASFT LNKPISEIDI 120 KNMWQHVLHK KSQELMKINM TEDQENVIDK DIDEIEAFRA SLKRQRTSQA SLLGRRHFIS 180 RFTTSEEYHK RKIITNAERR SKPGCPIEVE NKRKEWLKVD NSVGRRQSLW TNERHMKFLA 240 AISILGEKEF RPKSILRIMN DPNLTHLQVA SHLQKYKTQI EGIKDVLWRN EWKSTNKTVE 300 YLSDYEYPFK TSNLTKNLIA CNSLWNSLRK KTSSSSSPIN PFLFKNPTIE RKKKMSKFHR 360 SKKLDLSNHS RLGNIFNKSS MNVSSIPSTI SSNPTYNNLS IGNANHTGLV PTSLGYFGEN 420 VLPQEDIGMN HVGLVSGEIP YEFPMKTNMT SFETNTNEGP DDSIENLISF DIGVEKNMAS 480 WLEETGFPEE NNLLPSGYLT DNKYKTQIEG IKDVLWRNEW KSTNKTVEYL SDYEYPFKTS 540 NLTKNLIACN SLWNSLRKKT SSSSSPINPF LFKNPTIERK KKMSKFHRSK KLDLSNHSRL 600 GNIFNKSSMN VSSIPSTISS NPTYNNLSIG NANHTGLVPT SLGYFGENVL PQEDIGMNHV 660 GLVSGEIPYE FPMKTNMTSF ETNTNEGPDD SIENLISFDI GVEKNMASWL EETGFPEENN 720 LLPSGYLTDN VAFRKPIDST HDTSMGNHDR SVATNIGSTS QQHNTMESCE YNDIEAVNQK 780 DDIEGEDHLE DYRDCIDWID QVMNKDA*

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence Send to blast

MVGTITPQNV DDIFVLLIEH DTASVASLTS MLEQFSKRVI SMDAVSKALS MIEKQKKDIG  60
LVIANIEMPQ LDSHSFLTAL LQKNIPLTLI NPETKTKKPS DLLTNGASFT LNKPISEIDI  120
KNMWQHVLHK KSQELMKINM TEDQENVIDK DIDEIEAFRA SLKRQRTSQA SLLGRRHFIS  180
RFTTSEEYHK RKIITNAERR SKPGCPIEVE NKRKEWLKVD NSVGRRQSLW TNERHMKFLA  240
AISILGEKEF RPKSILRIMN DPNLTHLQVA SHLQKYKTQI EGIKDVLWRN EWKSTNKTVE  300
YLSDYEYPFK TSNLTKNLIA CNSLWNSLRK KTSSSSSPIN PFLFKNPTIE RKKKMSKFHR  360
SKKLDLSNHS RLGNIFNKSS MNVSSIPSTI SSNPTYNNLS IGNANHTGLV PTSLGYFGEN  420
VLPQEDIGMN HVGLVSGEIP YEFPMKTNMT SFETNTNEGP DDSIENLISF DIGVEKNMAS  480
WLEETGFPEE NNLLPSGYLT DNKYKTQIEG IKDVLWRNEW KSTNKTVEYL SDYEYPFKTS  540
NLTKNLIACN SLWNSLRKKT SSSSSPINPF LFKNPTIERK KKMSKFHRSK KLDLSNHSRL  600
GNIFNKSSMN VSSIPSTISS NPTYNNLSIG NANHTGLVPT SLGYFGENVL PQEDIGMNHV  660
GLVSGEIPYE FPMKTNMTSF ETNTNEGPDD SIENLISFDI GVEKNMASWL EETGFPEENN  720
LLPSGYLTDN VAFRKPIDST HDTSMGNHDR SVATNIGSTS QQHNTMESCE YNDIEAVNQK  780
DDIEGEDHLE DYRDCIDWID QVMNKDA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g083490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010513652.1	0.0	PREDICTED: putative two-component response regulator-like APRR6
Swissprot	Q9C9F6	0.0	APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBL	R0I914	0.0	R0I914_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010513652.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13685	14	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	1e-165	pseudo-response regulator 6