PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g083540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 212aa    MW: 24031.3 Da    PI: 8.3567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g083540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-0779127154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r+ h   Er+RR+  +++ e L++++P +     +K + a  L  +++Y+ksL
  Csa05g083540.1  79 QRQRHVLKERKRRQGFKEKVEILQSMMPMP-----PKSDIAGNLDNVIDYLKSL 127
                     7999*************************9.....79999999********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.16E-777127No hitNo description
PROSITE profilePS5088812.48178127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1179152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-579127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-879136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEGNNRKEEG IYEEEEVCSY PKIVNAVRSN DRSEQKPLQQ KLGAHPSSMP NDVTMKSDLV  60
EKVDEHQPDE ESNRPAKLQR QRHVLKERKR RQGFKEKVEI LQSMMPMPPK SDIAGNLDNV  120
IDYLKSLLYQ VDLMNTAYAA GANSAYMLPY YGAQPPSMSP WGYYPPAIPM MPQQLMRYIP  180
QNGQGNNNMA KPDQTKPPPD QTKPSPDKTK P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490LKERKRR
28691ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g083540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511813.11e-154PREDICTED: transcription factor bHLH109-like
TrEMBLR0GE802e-57R0GE80_9BRAS; Uncharacterized protein
STRINGXP_010511813.11e-154(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150321417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68240.19e-45bHLH family protein