PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g083550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 245aa    MW: 27661.1 Da    PI: 5.4762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g083550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.3e-06184207326
                     HHHHHHHHHHHHHHHHHHHHHHCT CS
             HLH   3 rahnerErrRRdriNsafeeLrel 26 
                     +a n  E+rRR +iN ++e+L+el
  Csa05g083550.1 184 EARNLTEKRRRTDINAKIETLKEL 207
                     5789******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.80E-5176207No hitNo description
Gene3DG3DSA:4.10.280.101.3E-4179208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
GLSQEPSFPL LFTLLYKCLF LLAQALHHYS YSSVSSHFDI MNFNYYDQDT NEFWSSFSQS  60
FVVPDPRDEF YPAIRSPITA MPISMAVDVP AEPWKVLEDG DNDIALWNNA AAEVDAKNND  120
ELLQAIIAWK PMEEGKEKEK EKGKEKEKGK EKEKGKGKGK GKEKEDVAVE ETMTLSKRRR  180
GNTEARNLTE KRRRTDINAK IETLKELTRC TEKAFYYPPS HDTVNGHGDG LSTGRSGTMD  240
VPSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177193RRRGNTEARNLTEKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g083550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415444.29e-82PREDICTED: uncharacterized protein LOC104701444