PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g084960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 338aa    MW: 36568.6 Da    PI: 4.3269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g084960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16128172250
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50 
                     +  GVr++k +g+W+AeIr+p        +r++lg+f+t eeAa a++  +
  Csa05g084960.1 128 KPVGVRQRK-WGKWAAEIRHP-----IlkTRIWLGTFDTLEEAANAYDLKK 172
                     789*****9.**********8.....556*******************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.79E-22127169No hitNo description
PfamPF008476.3E-11128171IPR001471AP2/ERF domain
SMARTSM003803.3E-18128188IPR001471AP2/ERF domain
PROSITE profilePS5103218.281128187IPR001471AP2/ERF domain
PRINTSPR003678.7E-8129140IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15130175IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-20131174IPR001471AP2/ERF domain
PRINTSPR003678.7E-8151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVEVRKEQSL SGTTTSGGEM KKRAKRNNTL SSSSSSSLPQ ETQPLRKVRI IVNDPYATDD  60
SSSDEEEFMI VPKPRKVKRI VREINFPSME VVSEQQPSQS SSQDSTKTVS KKAAAAGSSE  120
APKVVTKKPV GVRQRKWGKW AAEIRHPILK TRIWLGTFDT LEEAANAYDL KKVEFDALVA  180
KPAVSSSETS QCSRSSPVAP VEQDDTSASA LTCVNKTTVE VSKEEIVAPT PTPNAAAGGD  240
KESLFGFDFT DLQIPDLGIF EDGPNGNDLD FDCLLNDDQF DGFGLLDDIQ GFEDDGPSEL  300
PDFDFADVEE LADSSFGFLD QLAPLNIGCP LKSFAAS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g084960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511854.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_010511856.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
SwissprotQ9CA271e-156EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLR0GF660.0R0GF66_9BRAS; Uncharacterized protein
STRINGXP_010511854.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-110ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]