PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g085140.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 340aa MW: 37555.1 Da PI: 9.501

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g085140.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.7e-32	200	255	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+++mkv+gLt+++vkSHLQkYRl+ Csa05g085140.1 200 KQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 255 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.821	197	257	IPR017930	Myb domain
SuperFamily	SSF46689	1.02E-17	197	258	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-28	198	258	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-27	200	255	IPR006447	Myb domain, plants
Pfam	PF00249	5.3E-8	202	253	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MNTLKHLNKN RKKIQVFQRE LPLCLELVTQ AIEACRKELS GTTTSEQQCS EQTTSVCGGP 60 VFEEFIPIKK RSFSQEDEEE EHESSPELEQ TNKKSDWLRS VQLWNPSPDL NPKEERVVKR 120 AKVVEVKPKS GAFQPFQKDK KRVLETDLQP AAVKVASSAP APATTTSSTT ETGGAKSDLD 180 KVGEEQIQMT QQHQTQTHRK QRRCWSPELH RRFLNALQQL GGSHVATPKQ IRDHMKVDGL 240 TNDEVKSHLQ KYRLHTRRPA TTVAAQSNGN PQQPQFVVVG GIWVPSPRDF HPPSDAANNG 300 GGVYAPVAVA AQSPKRSVER SCNSPGASSS TNTATTPVS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269\|PubMed:27016098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g085140.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269\|PubMed:27016098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010415495.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q8VZS3	1e-167	HHO2_ARATH; Transcription factor HHO2
TrEMBL	R0IF32	1e-179	R0IF32_9BRAS; Uncharacterized protein
STRING	XP_010415495.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	1e-112	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098] Sun X, et al. The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides. J. Exp. Bot., 2018. 69(7): p. 1749-1764 [PMID:29385617]