PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g085590.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 498aa MW: 53531 Da PI: 6.4142

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g085590.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.3e-09	323	371	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa05g085590.1 323 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 371 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-17	318	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.83E-11	318	375	No hit	No description
PROSITE profile	PS50888	15.478	320	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-17	321	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-6	323	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	326	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MDVSEEKRNR NSSNYDDTVD NPTVDWQVSG SNPVSASIGS YTQENLISAC PSSCSPSQMM 60 DSFGQTLWYD PTSVQQAVGY GGGFSVQNSG GNASSSSSFR GNIDRSLEMG WNLPNLLPPK 120 GNNGLFLPNV SSFLPPSMAQ FPADSGFIER AARFSLFSGG NFSDMVNQPL GNPESIGLFL 180 QGGGTMQGHC QSNELGEPHN DASIVVKEPN VRSSEQSKLN VPGSGNVSED TQSSGGNGQK 240 GGETSSKGFD TRKRKRNGQN SEAAQSHRSQ QSEEEPDNKR NKEQSPNSPG NKTNSGKQQG 300 KQSSDPPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC NKVTGKAVML 360 DEIINYVQSL QRQVEFLSMK LATVNPQMDF NLEGLLAKDA LQLRAGSSST TPFPQNMSMA 420 YPPLPHGFMQ QTLSSIGRTI SSPLSPINGG FKRQETTGWE GDLQNVIHIN YGAGDVTPDP 480 QAAATASLPA ANMKVEP*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MDVSEEKRNR NSSNYDDTVD NPTVDWQVSG SNPVSASIGS YTQENLISAC PSSCSPSQMM  60
DSFGQTLWYD PTSVQQAVGY GGGFSVQNSG GNASSSSSFR GNIDRSLEMG WNLPNLLPPK  120
GNNGLFLPNV SSFLPPSMAQ FPADSGFIER AARFSLFSGG NFSDMVNQPL GNPESIGLFL  180
QGGGTMQGHC QSNELGEPHN DASIVVKEPN VRSSEQSKLN VPGSGNVSED TQSSGGNGQK  240
GGETSSKGFD TRKRKRNGQN SEAAQSHRSQ QSEEEPDNKR NKEQSPNSPG NKTNSGKQQG  300
KQSSDPPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC NKVTGKAVML  360
DEIINYVQSL QRQVEFLSMK LATVNPQMDF NLEGLLAKDA LQLRAGSSST TPFPQNMSMA  420
YPPLPHGFMQ QTLSSIGRTI SSPLSPINGG FKRQETTGWE GDLQNVIHIN YGAGDVTPDP  480
QAAATASLPA ANMKVEP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g085590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010511918.1	0.0	PREDICTED: transcription factor bHLH49-like
Refseq	XP_019101632.1	0.0	PREDICTED: transcription factor bHLH49-like
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	R0GH97	0.0	R0GH97_9BRAS; Uncharacterized protein
STRING	XP_010511918.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]