PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g086310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 340aa MW: 38192.3 Da PI: 6.7152

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g086310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3e-32	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl Csa05g086310.1 33 KPRLKWTCDLHHRFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 87 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-28	31	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-15	32	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-22	33	88	IPR006447	Myb domain, plants
Pfam	PF00249	8.9E-6	35	86	IPR001005	SANT/Myb domain
Pfam	PF14379	6.3E-23	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MCLLMEINNN ASDNSNSINH KAKMSLVLST DAKPRLKWTC DLHHRFIEAV NQLGGPNKAT 60 PKGLMKVMEI PGLTLYHLKS HLQKYRLGKS MKFDDNKLEV SSASENQEAE SNNDSRDLRG 120 CSVTEGNSNP TKEGLQITEA LQMQMEVQKK LHEQIEVQRH LQVKIEAQGK YLQSVLVKAQ 180 QTLAGYTSST LGMEFARTEL SRLASMVNRG CPSSSFSELT QAEEEEETEE GFLWRKKPNS 240 RGISQLRCSV ESSLTSSETS ETKLDDNNNI NKTIELPLME IKSEVMKGKK RSFNDVVCVE 300 QQPLMKRIFG VDDDEHLKLS LNSYKKDMET CPNIGLGFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g086310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029516	0.0	BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010512004.1	0.0	PREDICTED: myb family transcription factor PHL8 isoform X2
Swissprot	F4I274	0.0	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	R0IB87	0.0	R0IB87_9BRAS; Uncharacterized protein
STRING	XP_010512002.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]