PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g087690.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 381aa MW: 42546.1 Da PI: 6.6682

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g087690.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.8	2e-27	201	260	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ +ed++++ +tYeg+H+h+ Csa05g087690.1 201 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCgEEDTSAFMTTYEGNHDHP 260 8*************************99******845799***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-28	185	262	IPR003657	WRKY domain
PROSITE profile	PS50811	24.776	195	262	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-24	195	262	IPR003657	WRKY domain
SMART	SM00774	3.1E-33	200	261	IPR003657	WRKY domain
Pfam	PF03106	2.5E-25	201	260	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MIKEETVSCY QPFDGVMGES DKEEELDATK AKVEKVREEN EKLKLLLSTI LNNYNSLQMH 60 VSEVLRQQQG ASIELEVDRD QSEDNDFGVD ISLRLGRSSE QTISRKEEKV VKASDEKEER 120 SKKKRSSLGL GFQIQNCEDS TSKLDYLCRQ VKNVNAENKC VSSRKDVKSA TNENHQEEHE 180 QTSLKKTRVC VKATCEDPSI NDGCQWRKYG QKTAKTNPLP RAYYRCSMSS NCPVRKQVQR 240 CGEEDTSAFM TTYEGNHDHP LPMEATHMAA GTSAAASLLQ SGSSSSSTTS ASLSYYFPYH 300 HFSISTTNAH PTVTLDLTRP NYTNQSPISS SSFSLNFSSS EPPPPSSQDH TLNFGGLRTQ 360 APLNTDSLMA RYRMRLSGQQ *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MIKEETVSCY QPFDGVMGES DKEEELDATK AKVEKVREEN EKLKLLLSTI LNNYNSLQMH  60
VSEVLRQQQG ASIELEVDRD QSEDNDFGVD ISLRLGRSSE QTISRKEEKV VKASDEKEER  120
SKKKRSSLGL GFQIQNCEDS TSKLDYLCRQ VKNVNAENKC VSSRKDVKSA TNENHQEEHE  180
QTSLKKTRVC VKATCEDPSI NDGCQWRKYG QKTAKTNPLP RAYYRCSMSS NCPVRKQVQR  240
CGEEDTSAFM TTYEGNHDHP LPMEATHMAA GTSAAASLLQ SGSSSSSTTS ASLSYYFPYH  300
HFSISTTNAH PTVTLDLTRP NYTNQSPISS SSFSLNFSSS EPPPPSSQDH TLNFGGLRTQ  360
APLNTDSLMA RYRMRLSGQQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-19	200	262	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g087690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493530	0.0	AB493530.1 Arabidopsis thaliana At1g69810 mRNA for hypothetical protein, partial cds, clone: RAAt1g69810.
GenBank	BT029234	0.0	BT029234.1 Arabidopsis thaliana At1g69810 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010512040.1	0.0	PREDICTED: probable WRKY transcription factor 36
Swissprot	Q9CAR4	0.0	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	R0HY67	0.0	R0HY67_9BRAS; Uncharacterized protein
STRING	XP_010512040.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	0.0	WRKY DNA-binding protein 36

Publications ? help Back to Top
Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]