PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g091650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 768aa    MW: 85645.7 Da    PI: 6.2902
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g091650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1322e-4156132278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqv++C adl+++k+yhrrhkvC++hska+++lv+g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Csa05g091650.1  56 CQVDNCGADLTKVKDYHRRHKVCQMHSKATSALVRGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANP 132
                     **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-3351117IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.1853130IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.63E-3955135IPR004333Transcription factor, SBP-box
PfamPF031101.4E-3056129IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.206.3E-6610732IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.29E-7635732IPR020683Ankyrin repeat-containing domain
CDDcd002043.71E-7638734No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MDNMNKRRAV TVMPMDDDDD DDAPKLTLNL GGSCGSGNIA KKTKLGGGLQ TRATSCQVDN  60
CGADLTKVKD YHRRHKVCQM HSKATSALVR GIMQRFCQQC SRFHVLEEFD EGKRSCRRRL  120
AGHNKRRRKA NPDTLGDGTP MSDGQTSNCL LITLLKILSN MHLNQSDQTG DQDLLSHLLK  180
SLVSQAGEHV GKNLVGLMQG GGGLEASQAL LSLEQAHRED IKHHSVNVLE TPWQEVYPNC  240
SEERAVLDRS QKQVKMNAFD LNDVYIDSDG TTDIERSSPP PTNPATSPLD YHQDSRQSSP  300
PQTSRNSDSA SNQSPSSSGR DAQSRTDRIV FKLFGKVPND FPVALRGQIL DWLAHTPTDM  360
ESYIRPGCIV LTVYLRQDEA SWEELCCDLS FSLRRLLDLS HDPLWTDGWI YLRVQNQFAF  420
AFDGQVVLDT SLPLRSHDNS QIITVRPLAV TRKAQFTVKG INLHRPGTRL LCAVEGTYLV  480
QEETRGVMEE SDDLKEQNKT DSVKFSCEIP IASGRGFMEI EDQDGLSSSF FPFIVSEDED  540
VCSEIRRLES TLEFTGTDSA MQAMYFIHEI GWLLHKSEVN SRLAESDHLF PLIRFKFLIE  600
FSMDREWCAV IKKLLNILFE EGTVDLSPDA ALSELCLLHR AVRKNSKLMV EMLLRFIPKK  660
TNLTLSGLFR PDAAGPAGLT PLHIAAGKDG SEDVLDALTD DPGMIGIQAW KTSRDNTGFT  720
PEDYARLRGH FSYICNGNST GNQPPKNTLW STFQSLSTLT TNKKRGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31561291184squamosa promoter binding protein-like 4
1wj0_A2e-3153110360squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g091650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936580.0AB493658.1 Arabidopsis thaliana At3g60030 mRNA for hypothetical protein, partial cds, clone: RAAt3g60030.
GenBankAJ1320960.0AJ132096.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 12.
GenBankBT0038170.0BT003817.1 Arabidopsis thaliana clone C105276 putative squamosa promoter binding protein 12 (At3g60030) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082923.10.0PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 12
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLC0SVF50.0C0SVF5_ARATH; Uncharacterized protein At3g60030 (Fragment)
STRINGXP_010469241.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]