PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g092390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 324aa    MW: 36594.5 Da    PI: 8.1059
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g092390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-05426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC +C ksF +   L  H+r+H
  Csa05g092390.1  4 YKCRYCFKSFANGRALGGHMRSH 26
                    9*********************9 PP
2zf-C2H2163.4e-05200222123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk+F++   L  H  +H
  Csa05g092390.1 200 YKCETCGKVFKSYQALGGHRASH 222
                     9************9999998887 PP
3zf-C2H210.70.0016257279123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F +   L  H r+H
  Csa05g092390.1 257 HECPICFRVFASGQALGGHKRSH 279
                     79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.19E-10326No hitNo description
Gene3DG3DSA:3.30.160.605.0E-4427IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.9E-6428IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.408426IPR007087Zinc finger, C2H2
SMARTSM003550.016426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4187224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.19E-10195222No hitNo description
PfamPF139121.9E-11199224IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.427200227IPR007087Zinc finger, C2H2
SMARTSM003550.0071200222IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037257279IPR007087Zinc finger, C2H2
PfamPF139121.3E-10257279IPR007087Zinc finger, C2H2
SMARTSM003550.24257279IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MENYKCRYCF KSFANGRALG GHMRSHMPSL HVDDEQEKPS QLSYETTESD VSSSSAKEKR  60
NGNDDPKFAS TSSLLLLEDD DDDESETESS RNVINLTRKR SKRTRKLDSF ATKKKKVKTS  120
QLGYKESDPE PPHSSASDTT TEEDLAFCLM MLSRDKWKKN KSSSNNKEVV KEIETDEDES  180
EGYNNRLSKM NRTTTTKGRY KCETCGKVFK SYQALGGHRA SHKKNRVSNK TEQQRNETEH  240
DNVVVSVVAA SAEKRIHECP ICFRVFASGQ ALGGHKRSHG IGNLSVNHHH HHQHQALESV  300
KQRMIDLNLP APTEEDEVSV VFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197115RKRSKRTRKLDSFATKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g092390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512387.10.0PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2021e-147ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLR0H5511e-175R0H551_9BRAS; Uncharacterized protein
STRINGXP_010512387.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-126C2H2-like zinc finger protein