PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g093720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 285aa    MW: 31664.5 Da    PI: 6.3781
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g093720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19112163156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++y+GVr++k +g+++AeIrdps+   r+r++lg+f taeeAa a+++a+ +++g+
  Csa05g093720.1 112 KKYRGVRQRK-WGKFAAEIRDPSS---RTRVWLGTFVTAEEAAVAYDRAAIQMRGH 163
                     59*******9.**********965...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-30112169No hitNo description
SMARTSM003802.9E-36113176IPR001471AP2/ERF domain
PfamPF008478.0E-13113163IPR001471AP2/ERF domain
PROSITE profilePS5103221.97113170IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21113170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-31113169IPR001471AP2/ERF domain
PRINTSPR003674.0E-10114125IPR001471AP2/ERF domain
PRINTSPR003674.0E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MERRTRRVKF SEHRTVTTVV AKQSEDSPRL VRIAVTDPFA TDSSSGEDED NVTVAAPRPR  60
VKRYVEEIRF CQGESSSSSA FAAVTAARKA KLKAEKAVVD HDDVSSSSVK PKKYRGVRQR  120
KWGKFAAEIR DPSSRTRVWL GTFVTAEEAA VAYDRAAIQM RGHNALTNFL TPPPSPSPPP  180
PTPLIDLDTV SACDSGKDSR QTLHSPTSVL RFNANEETEY RTEHEIEPIE LSPVKSEPWF  240
PDPFPLPDLS LADDYLWDSE TAPDLLFKVS PRDMFSCLLL LSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22112169159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g093720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512520.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3741e-116CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLR0H5A31e-130R0H5A3_9BRAS; Uncharacterized protein
STRINGXP_010512520.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.14e-71cytokinin response factor 6