PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g094560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 232aa    MW: 26346.3 Da    PI: 7.7062
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g094560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.8e-3270128159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v++s+fpr+YYrCt++ C vkk+vers +dp+ v++tYeg+H h+
  Csa05g094560.1  70 LDDGYKWRKYGQKPVRNSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHSHP 128
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-3157130IPR003657WRKY domain
SuperFamilySSF1182906.93E-2863130IPR003657WRKY domain
PROSITE profilePS5081130.7965130IPR003657WRKY domain
SMARTSM007742.1E-3670129IPR003657WRKY domain
PfamPF031062.3E-2471128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MENAGGGVPF YDLGQTRVYP LFSDFHHLSA ERLAELYRDY RFKITKSTSE KTKLKVPKVS  60
FITKSEVLNL DDGYKWRKYG QKPVRNSPFP RNYYRCTTTW CDVKKRVERS FSDPSSVITT  120
YEGQHSHPRP LPKGDSLGFN GSASRAHFGL PTLPPQLLDY NNHQQQGQSS FGAEYIIRQE  180
KGSDDDDEDD HDYAHVVKKS RTQDLLDGAG SVKEHGLLQD VVSSHIIKEE C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-25631301077Probable WRKY transcription factor 4
2lex_A4e-25631301077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g094560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211551e-164AF421155.1 Arabidopsis thaliana WRKY transcription factor 68 (WRKY68) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512623.11e-132PREDICTED: probable WRKY transcription factor 68
SwissprotQ93WV61e-107WRK68_ARATH; WRKY transcription factor 68
TrEMBLA0A178VDY31e-104A0A178VDY3_ARATH; WRKY transcription factor
STRINGXP_010512623.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150681619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62340.11e-110WRKY family protein