PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g095700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 294aa    MW: 33795.1 Da    PI: 6.057
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g095700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.25.2e-33261342103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......XTTSEEEEESXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......kekiweFkhksFkkg 89 
                     F++k+ye+++d+++++++sw + g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+Y ++ +  +++++         +++ weF ++ F  g
  Csa05g095700.1  26 FITKTYEMVNDPNINHIVSWCRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYFWRTSMMRSASNYCrmgfrkiETERWEFMNEGFLMG 120
                     9**********************************************************99998888877555677765559************* PP

                     XXXXXXXXXXXXXX CS
    HSF_DNA-bind  90 kkellekikrkkse 103
                     +++ll++ikr++s+
  Csa05g095700.1 121 QRDLLKSIKRRASS 134
                     ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3422131IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.2E-3022131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-4322131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-142649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2826131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-146476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-147789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDPSSSSRPR SMPQVPVQEP PGPSPFITKT YEMVNDPNIN HIVSWCRGGI SFVVWDPHSF  60
SATILPLYFK HNNFSSFVRQ LNTYFWRTSM MRSASNYCRM GFRKIETERW EFMNEGFLMG  120
QRDLLKSIKR RASSSAPPSL HHSQSEGHDP SVEAPQLRED SHVLMMEISR LRQEEQRARG  180
YIQAMEQRIN GAERKQRHMM TFLRRAVQNP SLLQQLLEQM TGVEEAAIID QASLVKTEAV  240
EHVSELEALA LEMQGYGRQR IDGVERELDD GFWEELLMSN DNSGEEEANV KQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-202213413123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g095700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386481e-167AL138648.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16M2.
GenBankAL1638181e-167AL163818.1 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project).
GenBankCP0026861e-167CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankJX1120281e-167JX112028.1 Arabidopsis thaliana truncated heat shock factor A7b mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512752.10.0PREDICTED: heat stress transcription factor A-7b-like isoform X1
SwissprotQ9M1V51e-159HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLD7LTQ21e-173D7LTQ2_ARALL; Uncharacterized protein
STRINGXP_010512752.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-145HSF family protein