PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g001710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 388aa    MW: 43321.2 Da    PI: 6.9915
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g001710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.13.4e-27196249155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W+ eLHe+Fv+av+qL G++kA+Pk+ilelm+v+gL +e+v+SHLQk+Rl
  Csa06g001710.1 196 KSRVVWSIELHEQFVNAVNQL-GIDKAVPKRILELMNVPGLNRENVASHLQKFRL 249
                     68*******************.********************************8 PP
2Response_reg74.15.6e-25131211109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vdD+ + + +l+q+l +  y +v+ +++++ al++l+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++a g  +++   ++ G
  Csa06g001710.1  13 ILVVDDDTSCLLILEQMLLRLMY-QVTICSQADVALTILRERKdcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSADGRTTTVMTGINHG 105
                     89*********************.***************99999***********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ peel +
  Csa06g001710.1 106 ACDYLIKPIRPEELKN 121
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.3E-1441385IPR017053Response regulator B-type, plant
SuperFamilySSF521729.25E-369140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4010147No hitNo description
SMARTSM004481.4E-2911123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.81412127IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-2213121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.34E-2714126No hitNo description
Gene3DG3DSA:1.10.10.602.1E-28193254IPR009057Homeodomain-like
PROSITE profilePS5129410.949193252IPR017930Myb domain
SuperFamilySSF466891.47E-18194253IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23196249IPR006447Myb domain, plants
PfamPF002491.6E-5198247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAISDQFPNG LRILVVDDDT SCLLILEQML LRLMYQVTIC SQADVALTIL RERKDCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS ADGRTTTVMT GINHGACDYL IKPIRPEELK  120
NIWQHVVRRR CVMNKELRSS LALEDNNKNS GSVETVFSVS ECSEGSLMKP RKKKKKSVDR  180
EDNEDDDLLD PGNSKKSRVV WSIELHEQFV NAVNQLGIDK AVPKRILELM NVPGLNRENV  240
ASHLQKFRLY LKRLSGAASQ SKDTECIKRY ENIQALVSSG QVHPQTLAAL FGQPIDNHLS  300
ASFGVWIPND DVDRSQTQNL AVDVSSASKR PVSVSTTSMA VHGLSSSANF SQKGDSNNNT  360
DHSIRQGYGS NVNEESWILE RSSRQRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19195255464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g001710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0997260.0AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
GenBankAY1288870.0AY128887.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513906.10.0PREDICTED: two-component response regulator ARR14-like
SwissprotQ8L9Y30.0ARR14_ARATH; Two-component response regulator ARR14
TrEMBLR0H7860.0R0H786_9BRAS; Two-component response regulator
STRINGXP_010513906.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.10.0response regulator 14