PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g002290.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 500aa MW: 57613.4 Da PI: 6.8582

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g002290.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	412	436	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C F++ +++++H++t H Csa06g002290.1 412 FDCETCECDFKSLDDFTKHLSTneH 436 67******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01936	5.1E-14	14	142	IPR021139	NYN domain, limkain-b1-type
CDD	cd10910	1.53E-43	14	155	No hit	No description
SuperFamily	SSF57667	5.12E-5	172	208	No hit	No description
SMART	SM00355	6	183	207	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	185	207	IPR007087	Zinc finger, C2H2
Pfam	PF01936	7.4E-10	241	363	IPR021139	NYN domain, limkain-b1-type
CDD	cd10910	2.62E-41	241	384	No hit	No description
SMART	SM00355	6.3	412	436	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.6	412	441	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	414	436	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MWNYPAKPEY ATAKIAVWWD MVDCPIPEGY EAHRVRPSIE GAFKKLGYYG PVSITAYGDQ 60 TQTPDYLLRG LSSTGVSVAH ASTESTCALM YSDMVEWRGY NPPPATMMFI SNQVDHVFSL 120 DLVRLQQETL YNLFLAYSVS SKAIPALETS AEWRWNKLLE SKTKKTRVVK KYEEEEDIDP 180 AMFYCKSCDI DFQSLRKLRK HLSSRYHAIE AVICPTPREI SPVTTKWGRN YPAKPEYATA 240 KILVLWDMVD CPIFEGYEAH RVRPSIEGAF KELGYSGPVS ITAYGDQSQT PDHLLRGLSS 300 TGVAVAHAIT EVRYRRMMSD FSEWQELNPP PATMMLISDQ MENFFSTFVA QHQQESKYNM 360 FLAYSFRPDK MLAVVTSAEW LWESLLGVSE TRRHVLQRCS SQRGERESTG MFDCETCECD 420 FKSLDDFTKH LSTNEHAWEE SCIHENLRSL EDERIMRGLR EVEEYFPKSK RFRKAFRTGF 480 RPFHNHHLHL TNRGAKKSQ*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MWNYPAKPEY ATAKIAVWWD MVDCPIPEGY EAHRVRPSIE GAFKKLGYYG PVSITAYGDQ  60
TQTPDYLLRG LSSTGVSVAH ASTESTCALM YSDMVEWRGY NPPPATMMFI SNQVDHVFSL  120
DLVRLQQETL YNLFLAYSVS SKAIPALETS AEWRWNKLLE SKTKKTRVVK KYEEEEDIDP  180
AMFYCKSCDI DFQSLRKLRK HLSSRYHAIE AVICPTPREI SPVTTKWGRN YPAKPEYATA  240
KILVLWDMVD CPIFEGYEAH RVRPSIEGAF KELGYSGPVS ITAYGDQSQT PDHLLRGLSS  300
TGVAVAHAIT EVRYRRMMSD FSEWQELNPP PATMMLISDQ MENFFSTFVA QHQQESKYNM  360
FLAYSFRPDK MLAVVTSAEW LWESLLGVSE TRRHVLQRCS SQRGERESTG MFDCETCECD  420
FKSLDDFTKH LSTNEHAWEE SCIHENLRSL EDERIMRGLR EVEEYFPKSK RFRKAFRTGF  480
RPFHNHHLHL TNRGAKKSQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g002290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019101786.1	0.0	PREDICTED: uncharacterized protein LOC104789994
TrEMBL	D7MR38	0.0	D7MR38_ARALL; Uncharacterized protein
STRING	XP_010513979.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1032	4	4