PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g003110.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 215aa MW: 24772.6 Da PI: 9.8634

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g003110.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.2	4.4e-18	14	60	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ien+s r+ tf kR++g KK +ELSvLC++e++ +i+s ++ + e Csa06g003110.1 14 YIENDSMRKATFNKRKKGFVKKIHELSVLCGIEACAVIYSLSNSVSE 60 59**************************************9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.35E-23	5	89	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.5E-24	5	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.502	5	65	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.78E-28	6	89	No hit	No description
PRINTS	PR00404	6.6E-12	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-16	15	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-12	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-12	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVNIMTRKKL NLSYIENDSM RKATFNKRKK GFVKKIHELS VLCGIEACAV IYSLSNSVSE 60 VWPSNLGVKN AVGKFEMLTD MEQEKKMVNH EGFLKQNISK AMGNNKRKMK NNAERMMKEA 120 MFELLGGKGD RFKLPNIHRE DLCKYIDQYL NELYHHKNKI LRQSHVEYGE SSEAATNVMA 180 PTSSVEVNFQ FFPTLNVSNS LYYYPVQIKS QFSY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g003110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010518578.1	1e-159	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	8e-46	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	S6B403	2e-96	S6B403_ARAHA; Agamous-like MADS-box protein AGL45
STRING	XP_010518578.1	1e-159	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	9e-96	M-type_MADS family protein

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]