PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g004330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 678aa    MW: 74712.1 Da    PI: 8.5098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g004330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33251307259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers  d++v+ei+Y+g+H he
  Csa06g004330.1 251 DDGYNWRKYGQKQVKGSDFPRSYYKCTHQACPVKKKVERSL-DGQVTEIIYKGQHSHE 307
                     8****************************************.***************7 PP
2WRKY105.33.3e-33416472259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers  d++v+ei+Y+g+H he
  Csa06g004330.1 416 DDGYNWRKYGQKQVKGSDFPRSYYKCTHQACPVKKKVERSL-DGQVTEIIYKGQHSHE 472
                     8****************************************.***************8 PP
3WRKY104.65.2e-33580638159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++ C v+k+ver+a+dpk+v++tYeg+Hnh+
  Csa06g004330.1 580 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPACGVRKHVERAANDPKAVVTTYEGKHNHD 638
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-29241309IPR003657WRKY domain
PROSITE profilePS5081123.973245309IPR003657WRKY domain
SuperFamilySSF1182901.31E-25248309IPR003657WRKY domain
SMARTSM007741.4E-36250308IPR003657WRKY domain
PfamPF031062.2E-25251306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.5E-29406474IPR003657WRKY domain
PROSITE profilePS5081123.697410474IPR003657WRKY domain
SuperFamilySSF1182901.7E-25413474IPR003657WRKY domain
SMARTSM007741.4E-36415473IPR003657WRKY domain
PfamPF031062.2E-25416471IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-36565640IPR003657WRKY domain
SuperFamilySSF1182904.45E-29572640IPR003657WRKY domain
PROSITE profilePS5081137.39575640IPR003657WRKY domain
SMARTSM007746.9E-38580639IPR003657WRKY domain
PfamPF031062.3E-25581638IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAEKKEDQEQ PPSKLLKPST GRPTISLPPR PFGEMFFSGG VGFSPGPMTL VSNLFSDPDE  60
LKSFSQLLAG AMASPAAAAV AAAAVVATAH HQTPVSSVGE GGGGDDVDPR FKQNRPTGLM  120
ITQPPGMFTV PPGLSPATLL DSPSFFGLFS PLQGAFGMTH QQALAQVTAQ AVQGNNYVHM  180
QQSQQSEYPS STQQLQQQAS LIEIPTFSTE HRSQIPSPPV QDSSQQGQRE TSDISVSEHR  240
SQPQNADKPA DDGYNWRKYG QKQVKGSDFP RSYYKCTHQA CPVKKKVERS LDGQVTEIIY  300
KGQHSHELPQ KRGNNNGSSK NSDVATQFQT SNSSLNKSKR DQETSQQSQQ SEYPSSTQQL  360
QQQASLIEIP TFSTEHRSQI PSPPVQDSSQ QGQRETSDIS VSEHRSQPQN ADKPADDGYN  420
WRKYGQKQVK GSDFPRSYYK CTHQACPVKK KVERSLDGQV TEIIYKGQHS HEPPQKRGNN  480
NGSSKNSDVA TQFQTSNSSL NKTKRDQETS QVTTTEQMSE ASDGEEVGNA ETSVGEKHVD  540
EPDPKRRNTE VRVSEPVASS HKTVTEPRII VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP  600
RSYYKCTTPA CGVRKHVERA ANDPKAVVTT YEGKHNHDVP AARTSSHQLR PNNQHNNSTG  660
NYNQQQPVAR LRLKEEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-43251641878Probable WRKY transcription factor 4
2lex_A3e-43251641878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g004330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247010.0AF224701.1 Arabidopsis thaliana WRKY DNA-binding protein 3 (WRKY3) mRNA, complete cds.
GenBankAK2290360.0AK229036.1 Arabidopsis thaliana mRNA for putative WRKY DNA-binding protein, complete cds, clone: RAFL16-33-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102162.10.0PREDICTED: probable WRKY transcription factor 3 isoform X2
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLR0H3G80.0R0H3G8_9BRAS; Uncharacterized protein
STRINGXP_010514101.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]