PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g004600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 287aa    MW: 33151.1 Da    PI: 9.3868
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g004600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.41.2e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a++ifs++gklye++s
  Csa06g004600.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box85.69.9e-29821748100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++++++ +  +q++ kLk+++e Lq++qRhllGe++ +++++eL+qLe+q++ sl++iRs+K + +l+q+++l+ ke++l e+n++Lr+klee
  Csa06g004600.1  82 NQSAKDLQDKYQDYLKLKSRVEVLQHSQRHLLGEEIAEMEVNELEQLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEE 174
                     46788899**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.137161IPR002100Transcription factor, MADS-box
CDDcd002651.07E-42277No hitNo description
SuperFamilySSF554553.4E-32279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-323859IPR002100Transcription factor, MADS-box
PfamPF014866.0E-2486172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.29588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS  60
PSGMAKTVEK YRKYSYATMD PNQSAKDLQD KYQDYLKLKS RVEVLQHSQR HLLGEEIAEM  120
EVNELEQLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEESDAALT  180
QSIWGASATE HSQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQGMSS YQSNPPIQEA  240
GFFKPLQGNV AYQMSHYNHK HAAMTNASNS ATTSQNVNGF FPGWMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-229317222101Developmental protein SEPALLATA 3
4ox0_B4e-229317222101Developmental protein SEPALLATA 3
4ox0_C4e-229317222101Developmental protein SEPALLATA 3
4ox0_D4e-229317222101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g004600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU813690.0U81369.1 Arabidopsis thaliana MADS box protein (AGL3) mRNA, complete cds.
GenBankAY0638940.0AY063894.1 Arabidopsis thaliana putative MADS-box protein AGL3 (At2g03710) mRNA, complete cds.
GenBankAY0963860.0AY096386.1 Arabidopsis thaliana putative MADS-box protein (AGL3) (At2g03710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514141.10.0PREDICTED: agamous-like MADS-box protein AGL3 isoform X2
SwissprotP293831e-168AGL3_ARATH; Agamous-like MADS-box protein AGL3
TrEMBLR0FPU91e-177R0FPU9_9BRAS; Uncharacterized protein
STRINGXP_010514140.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.21e-159MIKC_MADS family protein
Publications ? help Back to Top
  1. Maejima K, et al.
    Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen.
    Plant Signal Behav, 2015. 10(8): p. e1042635
    [PMID:26179462]