PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g004980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 167aa    MW: 19469.6 Da    PI: 6.792
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g004980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.4e-1374132563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     +++rr+ +NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++ +++ a+  +e+
  Csa06g004980.1  74 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNRVSETQASILKEN 132
                     79*************************************************99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-1370134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.78372135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.2E-1072124No hitNo description
PfamPF001706.3E-1174132IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.45E-1274124No hitNo description
CDDcd147025.26E-1775123No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MIPAEVTGYF QYLSPEYNII NMPSSPTSSL NYFNDLIINN NNYSSSSNSQ ELMISNNSAS  60
DEDHHQSIII LDERKQRRML SNRESARRSR MRKQRHLDEL WSQVIRLRNE NNCLIDKLNR  120
VSETQASILK ENSKLKEEAS DLRKLVCELK SNKNNENSIQ REFEDN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18693RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00262DAPTransfer from AT2G04038Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g004980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935450.0AB493545.1 Arabidopsis thaliana At2g04038 gene for hypothetical protein, partial cds, clone: RAAt2g04038.
GenBankAC0071780.0AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514166.11e-116PREDICTED: basic leucine zipper 8-like
TrEMBLR0H8E41e-88R0H8E4_9BRAS; Uncharacterized protein
STRINGXP_010514166.11e-115(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.18e-89basic leucine-zipper 48