PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g010130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 93aa    MW: 10716.1 Da    PI: 9.3615
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g010130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.4e-0725592154
                    HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     +Lr+ lP+ + + +s+K+s + +L+++++YI++L
  Csa06g010130.1 25 GKLRQFLPEiRERRRSEKVSASKVLQETCNYIRNL 59
                    69*******999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.489459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-62074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-72377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSNRRSRQSS RASRISDDQM IDLVGKLRQF LPEIRERRRS EKVSASKVLQ ETCNYIRNLH  60
REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g010130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246401e-107BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514602.11e-58PREDICTED: transcription factor PRE5
SwissprotQ9LJX13e-55PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A178V8X29e-53A0A178V8X2_ARATH; PRE5
STRINGXP_010514602.15e-58(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-47bHLH family protein