PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g015610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 151aa    MW: 17016.2 Da    PI: 5.0087
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g015610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.71.7e-092070350
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T...TSEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss...tgklyeys 50
                     + k +r+v  skRr++++ K    + L +a++av + s+   ++ +y++s
  Csa06g015610.1 20 CDTKQQRSVACSKRRQTLFSKVADFCLLSGANIAVFVTSPaenSDAVYTFS 70
                    577999*********************************822235677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-141069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.5631058IPR002100Transcription factor, MADS-box
CDDcd002663.71E-211194No hitNo description
SuperFamilySSF554557.33E-1612103IPR002100Transcription factor, MADS-box
PfamPF003191.2E-92369IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPAMTMKRGG TKRKIEIKKC DTKQQRSVAC SKRRQTLFSK VADFCLLSGA NIAVFVTSPA  60
ENSDAVYTFS GYSPASEIAD CYLNGKSPPK ITNPQTKLGF WWEDPDLYRY CDDLCELKMI  120
EDRYLVNQNE DNVGFVDSLW ETEKDNNGSE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g015610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010412491.11e-76PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0H9P91e-65R0H9P9_9BRAS; Uncharacterized protein
STRINGXP_010507155.15e-78(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.11e-62AGAMOUS-like 39