PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g018850.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 192aa MW: 21009 Da PI: 5.8542

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g018850.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	82.2	1.4e-25	16	118	10	89
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.......eaesssssasnsssg.... 88 k T+ gR RR+Rl+++ca ++F+L++eLGf++d++t+ WLl+ a+p i ++tg s +++s+c + s++++ Csa06g018850.1 16 KTPTSSRGRNRRIRLPVSCASQVFKLTQELGFKTDGETVGWLLRIAEPTILAATGHgvnttSDDTSSDCihpyiniH--NTSNMNQ----Lsfgn 104 77799***************************************************998874444455554443211..1111111....01112 PP TCP 89 .............k 89 + Csa06g018850.1 105 nctidnsvhyadtS 118 22333333322220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	14.636	12	68	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.1E-21	16	122	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MVLRNNKNNI GGKARKTPTS SRGRNRRIRL PVSCASQVFK LTQELGFKTD GETVGWLLRI 60 AEPTILAATG HGVNTTSDDT SSDCIHPYIN IHNTSNMNQL SFGNNCTIDN SVHYADTSAV 120 VSQAHQRENI TGHHGLVSPA ATMSTDYGST SFPENSMPQQ QPQPLDDEFD EEDEMGTAAQ 180 TYVNPENTNW R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g018850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010514851.1	1e-143	PREDICTED: transcription factor TCP16-like
TrEMBL	D7LNL1	1e-63	D7LNL1_ARALL; Uncharacterized protein
STRING	XP_010514851.1	1e-143	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16163	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	2e-27	TCP domain protein 16