PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g018900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 152aa MW: 17100 Da PI: 7.1437

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g018900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.8	2.2e-26	14	84	5	73
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec 73 +++ +++h kvggRdRR+Rl+ ++a ++F L+deLGf +d++t+ W l++a+pai ++tg s++++ + Csa06g018900.1 14 TRTPKDRHLKVGGRDRRIRLPPSVAPKLFSLTDELGFQSDGETVGWFLRNAEPAIFAATGHgvSTTPNDFI 84 56789********************************************************6644444222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-23	17	89	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.37	17	71	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MDSRKEMNNM EKATRTPKDR HLKVGGRDRR IRLPPSVAPK LFSLTDELGF QSDGETVGWF 60 LRNAEPAIFA ATGHGVSTTP NDFIHSSDKN FHNYYFNCGN FSNTINGNCS YTINGNNTIN 120 GTIDGDNWTV HHEMVFPVVW SDELRFGLVR F*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g018900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010412555.1	1e-100	PREDICTED: transcription factor TCP16-like
Refseq	XP_019102090.1	1e-100	PREDICTED: transcription factor TCP16-like
Swissprot	Q9M1U4	9e-47	TCP16_ARATH; Transcription factor TCP16
TrEMBL	D7LNL8	2e-45	D7LNL8_ARALL; Uncharacterized protein
STRING	XP_010412555.1	3e-99	(Camelina sativa)
STRING	XP_010514858.1	3e-99	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	8e-49	TCP domain protein 16

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]