PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g020380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 592aa    MW: 67106.1 Da    PI: 5.271
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g020380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.66.6e-1222175871374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+av+s d+++a + L+++++++s +gd++qRl  +++eAL+ar+++   +++  ++++ + ++++++ l+a+k f++++P+l++++
  Csa06g020380.1 217 MRDLLMQCAQAVASFDQSRAAEKLKEIRQHSSIRGDATQRLGYHLAEALEARITG---TMATPISATYS-RTSMVDILKAYKGFVQACPTLRMCY 307
                     5799***************************************************...33333333333.4569********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +taN++I+e +++++++HiiDf+i +G+Q p+L+qaL++R++gpp lR+Tg++ p+sg   +e++eetg+rL++f+++++vpfe++  +ak++ed
  Csa06g020380.1 308 FTANRTIYELASKATTLHIIDFGILYGFQLPCLIQALSNRDGGPPLLRVTGIELPQSGfrPSERVEETGRRLKRFCDKFKVPFEYSY-IAKNWED 401
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l+eL +++gE+++Vn++l+l++++de++sl+s+rd+vLkl+++++P+++v++e +  +ns+ Fl+rf eal ++salfd++ea+lp+e++ r+
  Csa06g020380.1 402 ITLDELVINTGETTVVNCILRLQYTPDETMSLNSPRDKVLKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSALFDMYEATLPEEDDCRT 496
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vErel+ r++++v+aceg+er++r et+++W+ r+ +aGFkp++l++++ k ak ++++ + + + ++++++++++gWk+r L++vS+W+
  Csa06g020380.1 497 LVERELIVRDAMSVIACEGSERFARPETYKQWQVRILRAGFKPAKLNKEIIKHAKEIVKQRYHKDFVIDNDNHWMLQGWKGRVLYAVSCWK 587
                     **************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.922191567IPR005202Transcription factor GRAS
PfamPF035142.3E-119217587IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MDAVLQVTVD GFKFENGSGS CCKPMNNLDE SCFTCFDESE SQSDSSSPTE SKVCSDYLPV  60
FKYINDMLME EDLEDQPCML VDSLALQAAE KSFYEVLQDQ SPPTSDQISN DLEDGSLGNF  120
SSITSLHQPT SDIIGSPEVV SEESTRRYHH RDDDLEGGRK SKLPAISTMD ELAEKYEEVL  180
LICQKNNHGE ASPNKTKPAK GSSNRSKQQK SEQPVDMRDL LMQCAQAVAS FDQSRAAEKL  240
KEIRQHSSIR GDATQRLGYH LAEALEARIT GTMATPISAT YSRTSMVDIL KAYKGFVQAC  300
PTLRMCYFTA NRTIYELASK ATTLHIIDFG ILYGFQLPCL IQALSNRDGG PPLLRVTGIE  360
LPQSGFRPSE RVEETGRRLK RFCDKFKVPF EYSYIAKNWE DITLDELVIN TGETTVVNCI  420
LRLQYTPDET MSLNSPRDKV LKLFRDINPD LFVFAEINGT YNSPFFLTRF REALFHCSAL  480
FDMYEATLPE EDDCRTLVER ELIVRDAMSV IACEGSERFA RPETYKQWQV RILRAGFKPA  540
KLNKEIIKHA KEIVKQRYHK DFVIDNDNHW MLQGWKGRVL YAVSCWKPAK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-452075889380Protein SCARECROW
5b3h_A8e-452075888379Protein SCARECROW
5b3h_D8e-452075888379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g020380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2264190.0AK226419.1 Arabidopsis thaliana mRNA for scarecrow-like protein, complete cds, clone: RAFL06-09-N12.
GenBankAL1333140.0AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12.
GenBankAY0874180.0AY087418.1 Arabidopsis thaliana clone 35201 mRNA, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514984.10.0PREDICTED: scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLD7LN250.0D7LN25_ARALL; Scarecrow transcription factor family protein
STRINGXP_010514984.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]