PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g021460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 259aa    MW: 28878.4 Da    PI: 5.0034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g021460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-10141187555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Csa06g021460.1 141 HSLAERARREKISERMKFLQDLIPGC----NKIIGKALVLDEIINYIQSLQ 187
                     999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.74E-10134191No hitNo description
SuperFamilySSF474596.02E-17134201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.269136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17137204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-8141187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-8142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSDPELVMDP PVVNESSFSE IWPFSVNYGI QLPLNLGQDF TCRSELFGYS GNSYISAAEE  60
STVTDLTGGG RKRRPLTSVT RLKESRKKKM KVCGSEGETE DGLRPEDETS SGGGGKETEE  120
KSPAKDYIHV RARRGQATDR HSLAERARRE KISERMKFLQ DLIPGCNKII GKALVLDEII  180
NYIQSLQRQV EFLSMKLEVV NSDVSSGPEV GMFASGDLNT LPIEVRRTLF DQQEADKALG  240
SQPDWLHMRI DENFERTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17188KRRPLTSVTRLKESRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g021460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721044e-76AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845784e-76AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230234e-76AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515095.10.0PREDICTED: transcription factor bHLH79 isoform X2
SwissprotQ9LV171e-105BH079_ARATH; Transcription factor bHLH79
TrEMBLR0HHA91e-155R0HHA9_9BRAS; Uncharacterized protein
STRINGXP_010426245.11e-159(Camelina sativa)
STRINGXP_010515094.11e-158(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]