PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g022750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 257aa    MW: 29415.2 Da    PI: 7.2202
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g022750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.2e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l  +v ++G g+W+tI+ + g+ R +k+c++rw +yl
   Csa06g022750.1 20 KGLWSPEEDEKLRSYVLKYGHGCWSTIPIHTGLQRNGKSCRLRWVNYL 67
                     678*******************************************97 PP
2Myb_DNA-binding47.83.2e-1574117247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +T+eE+  l+ ++ +lG++ W+ I++ ++ gRt++++k++w++ 
   Csa06g022750.1  74 STFTKEEEITLLSLHSMLGNK-WSQISKFLP-GRTDNEIKNYWHSN 117
                      689******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7681567IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-231570IPR009057Homeodomain-like
SMARTSM007171.7E-121969IPR001005SANT/Myb domain
SuperFamilySSF466891.61E-3019114IPR009057Homeodomain-like
PfamPF002499.5E-152067IPR001005SANT/Myb domain
CDDcd001671.14E-102367No hitNo description
PROSITE profilePS5129423.98568122IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-2471121IPR009057Homeodomain-like
SMARTSM007176.3E-1572120IPR001005SANT/Myb domain
PfamPF002494.1E-1473117IPR001005SANT/Myb domain
CDDcd001671.35E-1075118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVYKSEKPNR KLKSQEKQRK GLWSPEEDEK LRSYVLKYGH GCWSTIPIHT GLQRNGKSCR  60
LRWVNYLRPG LKKSTFTKEE EITLLSLHSM LGNKWSQISK FLPGRTDNEI KNYWHSNLKK  120
GVTLTQLETS RTHQTPSITN SLETFQSSST ERCSSSINLG ETFNAQTPSF SPSLVFSEWL  180
DHSLLMDQSP QNLVVPQERG FIVPCGPLHH LENNSSPDLV PTSDFLLEDE ISEVEFCTSF  240
SDNFLFEGLI NELRQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28201227108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g022750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195960.0AY519596.1 Arabidopsis thaliana MYB transcription factor (At3g48920) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515231.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K43e-58LAF1_ARATH; Transcription factor LAF1
TrEMBLR0FRN71e-146R0FRN7_9BRAS; Uncharacterized protein
STRINGXP_010515231.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-147myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]