PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g023210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 219aa    MW: 23920.6 Da    PI: 11.1923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g023210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.5e-14946746
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     eEd+ +  a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa06g023210.1  9 EEDLMIMSAHAVHGNK-WAVIAKLLP-GRTDNAIKNHWNS 46
                     9***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.234152IPR017930Myb domain
SMARTSM007171.1E-6250IPR001005SANT/Myb domain
PfamPF002491.4E-12846IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-18849IPR009057Homeodomain-like
SuperFamilySSF466894.91E-13853IPR009057Homeodomain-like
CDDcd001675.91E-10945No hitNo description
SuperFamilySSF533832.21E-17112200IPR015424Pyridoxal phosphate-dependent transferase
PfamPF002027.5E-9114198IPR005814Aminotransferase class-III
Gene3DG3DSA:3.40.640.107.7E-16114197IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PfamPF034704.8E-5181202IPR005381Zinc finger-XS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031047Biological Processgene silencing by RNA
GO:0003677Molecular FunctionDNA binding
GO:0008483Molecular Functiontransaminase activity
GO:0030170Molecular Functionpyridoxal phosphate binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MFSTIESYEE DLMIMSAHAV HGNKWAVIAK LLPGRTDNAI KNHWNSALRR KPAGLWMDHH  60
HPGILEMPRD LSRSRSPSPS PSRRRKKSRS PPLPPTEAAA RAKRISSGTV SALKALNEVL  120
TKLVRFVNSG TEACMGVLRL ARAFTGKEKF IKFEGCYHGH ANSFLVKSGS GVATLGLRDS  180
PGVSKGSATR SARQKANHLA LAKFLENELA IYNITITQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdm_A3e-33122199116193Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic
5hdm_B3e-33122199116193Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g023210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293284e-72AK229328.1 Arabidopsis thaliana mRNA for glutamate-1-semialdehyde aminotransferase, complete cds, clone: RAFL16-58-I08.
GenBankAL1333154e-72AL133315.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8P19.
GenBankBT0253244e-72BT025324.1 Arabidopsis thaliana At3g48730 mRNA, complete cds.
GenBankCP0026864e-72CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.17e-23myb domain protein 109