PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g023920.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 301aa MW: 32743.4 Da PI: 9.7148

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g023920.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.5e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI + k R+ ++k++w++ Csa06g023920.1 5 KQKWTAEEETALKAGVLKHGTGKWRTILSDPEyssvlKSRSNVDLKDKWRN 55 79***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.501	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.77E-15	2	59	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	4.95E-18	6	56	No hit	No description
SMART	SM00526	1.6E-12	124	191	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	6.53E-12	128	203	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	17.497	128	196	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	3.4E-8	130	197	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	7.5E-6	131	189	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGAPKQKWTA EEETALKAGV LKHGTGKWRT ILSDPEYSSV LKSRSNVDLK DKWRNISVTA 60 LWGSRKKAKL ALKGAPTSGP RPDDNATAIT IVSLANGHIG GDVGGQLMVD APSPPEASCE 120 PPRAFKGPFT SVDKIILEAI TNLKRPFGPD GKSILRYIEE NFKMQLDMKR LVSSRLKYLT 180 NVGTLVKTKH KYRISPNYMD EGARQNLRSP QEFLEGNKEN TPKPEENGIK NLTKSQVDGE 240 VIIKGMTEKE AAAAAARAVA EAEFAIAEAE EAAREADEAE AEAEAAHIFA KAAMKALKYR 300 *

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g023920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010515350.1	0.0	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_019102307.1	0.0	PREDICTED: telomere repeat-binding factor 3-like
Swissprot	Q9M2X3	1e-148	TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBL	R0FQN8	1e-165	R0FQN8_9BRAS; Uncharacterized protein
STRING	XP_010515350.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3809	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	1e-130	telomere repeat binding factor 3

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]