PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g024290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 158aa    MW: 17390.9 Da    PI: 10.3784
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g024290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-182270355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +kG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  Csa06g024290.1 22 FKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 70
                    8*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-352184IPR001471AP2/ERF domain
PROSITE profilePS5103222.4842178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-292279IPR001471AP2/ERF domain
CDDcd000185.58E-272280No hitNo description
PRINTSPR003672.2E-82233IPR001471AP2/ERF domain
PfamPF008471.1E-112270IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-212279IPR016177DNA-binding domain
PRINTSPR003672.2E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDGGVAAAAV DVGGARKRER PFKGIRMRKW GKWVAEIREP NKRSRLWLGS YSTPEAAARA  60
YDTAVFYLRG PTATLNFPEL IPCIENSAAE DMSAATIRKK ATEVGAQVDA IGTTVVHNNK  120
RRRVFSQKRD FGGGLLKLVD LNKLPDPEYQ DDNLVTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1522791573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123KRRRV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g024290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515388.11e-113PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ9SNE13e-93ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLR0H6F62e-97R0H6F6_9BRAS; Uncharacterized protein
STRINGXP_010515388.11e-112(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.12e-92cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]