PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g024650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 627aa    MW: 70566.8 Da    PI: 8.237
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g024650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.51.4e-8025555222327
            GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiD 116
                     ++L +++e +s+ g+p++R+ +yf+eAL+++ ++         +p ++   + ++ + ++k++++++P+ kf+hltaNqaIlea+++++ +Hi+D
  Csa06g024650.1 255 ETLIQIRESVSELGNPIERVGFYFLEALSHKETE---------SPPSS---SLEDFILSYKTLNDACPYSKFAHLTANQAILEATNQSQNIHIVD 337
                     7899*************************99888.........33333...389***************************************** PP

            GRAS 117 fdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
                     f+i qG+QW aLlqaLa+R++g+p  ++i g+ +p+ g   + +l  tg+rL++fA+ l+++fefn+ v + ++ l+ ++++v+p+E+l+Vn++l
  Csa06g024650.1 338 FGIFQGIQWSALLQALATRASGKPtWIQILGIPAPSLGdsPEMSLIPTGNRLRDFAAILDLNFEFNL-VLTPIQLLTGSSFQVEPDEVLVVNFML 431
                     ********************887769**********99777888889*******************9.799************************ PP

            GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                     +l++llde++++     + L+l +slsP++v++ e e+++n+ +F++ + ++l++ysa+f+sle +l r+s+er  vEr+l+gr+i+++v ++++
  Csa06g024650.1 432 ELYKLLDETATSVG---TALRLARSLSPRIVTLGEYEVSLNRVEFANWVKNSLRFYSAVFESLEPNLERDSKERLRVERVLFGRRISDLVRTSND 523
                     ******99999999...9************************************************************************98876 PP

            GRAS 304 e.....rrerhetlekWrerleeaGFkpv 327
                     +     r+  +e++e+Wr  +++a ++ +
  Csa06g024650.1 524 NnkpgtRFGLMEEKEQWRVLINQAIMRLA 552
                     5334448889***********99877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.491209579IPR005202Transcription factor GRAS
PfamPF035144.9E-78255552IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MTWIERKDKS NPFILTPVPF TQHSFSLSPT PSPLADSFPA AAFSSSKIGP TNTSGPRHRR  60
WRKEEEKNSK KGDERFCRKG GRRRGKKKKQ QQQKQHKQQT QSFAYTLTGS GFSDPFQVTT  120
DPVFHFPHLE HNHQNAVASD GLRFIDGEFD SDEWVESLIN GGDSLQTNTD FPIYGQDPFV  180
TFPSRLNRVN KVDDSATQQL SQPPAMWTPS PPSPQHHHHH SPPSPPPPPQ PNFDLNQPLL  240
KVIHDYARKP ETKPETLIQI RESVSELGNP IERVGFYFLE ALSHKETESP PSSSLEDFIL  300
SYKTLNDACP YSKFAHLTAN QAILEATNQS QNIHIVDFGI FQGIQWSALL QALATRASGK  360
PTWIQILGIP APSLGDSPEM SLIPTGNRLR DFAAILDLNF EFNLVLTPIQ LLTGSSFQVE  420
PDEVLVVNFM LELYKLLDET ATSVGTALRL ARSLSPRIVT LGEYEVSLNR VEFANWVKNS  480
LRFYSAVFES LEPNLERDSK ERLRVERVLF GRRISDLVRT SNDNNKPGTR FGLMEEKEQW  540
RVLINQAIMR LAKRSCYYGT TITAHCIHLL NRSQGSSLWL GTMYLSSLFP LGVDRSGSIN  600
PIQAGPTCKL LYFPPIADKF NSNLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-942375456319GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g024650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936430.0AB493643.1 Arabidopsis thaliana At3g50650 mRNA for hypothetical protein, partial cds, clone: RAAt3g50650.
GenBankAK2292520.0AK229252.1 Arabidopsis thaliana mRNA for scarecrow-like 7, complete cds, clone: RAFL16-53-M18.
GenBankAL1329790.0AL132979.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426606.10.0PREDICTED: scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLR0FMQ80.0R0FMQ8_9BRAS; Uncharacterized protein
STRINGXP_010426606.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]