PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g024740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 134aa    MW: 14610.3 Da    PI: 10.4526
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g024740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822204.82.5e-63141331129
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                     +++gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DGttyrkgs+p+         +++ p+ss+q
  Csa06g024740.1  14 AATGRMPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGTTYRKGSRPM---------ETTPPCSSIQ 99 
                     579*************************************************************************.........8999****** PP

          DUF822  96 sslkssalaspvesysaspksssfpspssldsis 129
                     +s++ssa++sp++sy+asp+sss+psp+++d+i+
  Csa06g024740.1 100 LSPQSSAFQSPIPSYQASPSSSSYPSPTRFDHIP 133
                     *******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.1E-5716132IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MTASGGGGGG GSTAATGRMP TWKERENNKR RERRRRAIAA KIFTGLRSQG NYKLPKHCDN  60
NEVLKALCLE AGWIVHEDGT TYRKGSRPME TTPPCSSIQL SPQSSAFQSP IPSYQASPSS  120
SSYPSPTRFD HIPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A8e-261889372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B8e-261889372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C8e-261889372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D8e-261889372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g024740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024521e-144BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds.
GenBankBT0063101e-144BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426615.16e-93PREDICTED: BES1/BZR1 homolog protein 1
SwissprotQ9S7F31e-57BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBLA0A178VA203e-55A0A178VA20_ARATH; BEH1
STRINGXP_010426615.12e-92(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155111117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50750.11e-43BES1/BZR1 homolog 1