PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g026430.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 798aa MW: 89020.8 Da PI: 9.4167

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g026430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.1	6.2e-20	565	607	8	50
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + ++ kR+++++KKA ELSvLC++ev+vi ++ +g+l++ys Csa06g026430.1 565 HSSLSLMKRQATVFKKARELSVLCAIEVCVICYGADGTLKTYS 607 56789*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00320	52	162	201	IPR001680	WD40 repeat
SuperFamily	SSF50978	4.82E-34	167	253	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	7.6E-34	167	493	IPR015943	WD40/YVTN repeat-like-containing domain
SMART	SM00320	5.4	212	250	IPR001680	WD40 repeat
SMART	SM00320	5.4	287	325	IPR001680	WD40 repeat
SuperFamily	SSF50978	4.82E-34	288	493	IPR017986	WD40-repeat-containing domain
PROSITE profile	PS50294	10.1	293	376	IPR017986	WD40-repeat-containing domain
SMART	SM00320	9.1E-4	329	367	IPR001680	WD40 repeat
Pfam	PF00400	2.6E-4	334	367	IPR001680	WD40 repeat
PROSITE profile	PS50082	9.773	342	376	IPR001680	WD40 repeat
SMART	SM00320	35	418	457	IPR001680	WD40 repeat
SMART	SM00432	1.4E-6	547	609	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.83E-16	548	634	No hit	No description
SuperFamily	SSF55455	5.62E-15	568	642	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.83	568	610	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-11	569	606	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence Send to blast
HHRSLTYVII SNYTTFFIVK NLKTTAQNLR LFLLFVKSEI FANPIIIIIP QQNLSVPNFQ 60 SQLLFCFCFS LFCSIYKGSK LVRKKRKRPK EKYIYIYISI QKGMEIEEGS RESGHVVCGS 120 WIRRPKKVNW VVIAKASKRR GSSPALLNIF SFDPVTASLS SSPLATHTLK ESDGDPVTVT 180 VHPGGDYFIC STSKGGCKSF EIVGGATGVT ILAKELLPLQ NAGLQKCMAF SFDGSKLAVG 240 GLDGCLRVME WPNLGVILDE PKAHKSIRDM DFRSFEIVGG ATGVTILAKE LLPLQNAGLQ 300 KCMAFSFDGS KLAVGGLDGC LRVMEWPNLG VILDEPKAHK SIRDMDFSLD SEYLATTSTD 360 GSARIWKAED GFPLSTLERS GDENIELCRF SKDGTKPFLF CAAQRGETPL VNVYDISTWK 420 KLGFKKLSRK TASTMAVSLD GKYIALGGKD GDVSVAEVKT MEIYHYSKRL HLGQSIASLE 480 FCPSERVMLT TSSEWGEMMT KLSVPKEWKE WQIYALLFCL FMASVVAAYF FFENSDSFWR 540 LPMGKDQKRP KISLFGDSST PSEDHSSLSL MKRQATVFKK ARELSVLCAI EVCVICYGAD 600 GTLKTYSEER EKVEAIARRY AALSETKRRK RSVDLHEFLA KSNKKKLVRP RRVSKFPVWD 660 PRFDNYSGAQ VTGLVQSLER NLTRLQDRFR AVEEQRKMNQ GPSASSSTTT NTINQYLLPQ 720 QQQPNQFSMF LFNHENGNVS QIPLGLMNQG QSLMAPIPPE LLMIHLNADV GNYNLGSLGV 780 QGAFGPPLYD LSQPLFS*

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence Send to blast

HHRSLTYVII SNYTTFFIVK NLKTTAQNLR LFLLFVKSEI FANPIIIIIP QQNLSVPNFQ  60
SQLLFCFCFS LFCSIYKGSK LVRKKRKRPK EKYIYIYISI QKGMEIEEGS RESGHVVCGS  120
WIRRPKKVNW VVIAKASKRR GSSPALLNIF SFDPVTASLS SSPLATHTLK ESDGDPVTVT  180
VHPGGDYFIC STSKGGCKSF EIVGGATGVT ILAKELLPLQ NAGLQKCMAF SFDGSKLAVG  240
GLDGCLRVME WPNLGVILDE PKAHKSIRDM DFRSFEIVGG ATGVTILAKE LLPLQNAGLQ  300
KCMAFSFDGS KLAVGGLDGC LRVMEWPNLG VILDEPKAHK SIRDMDFSLD SEYLATTSTD  360
GSARIWKAED GFPLSTLERS GDENIELCRF SKDGTKPFLF CAAQRGETPL VNVYDISTWK  420
KLGFKKLSRK TASTMAVSLD GKYIALGGKD GDVSVAEVKT MEIYHYSKRL HLGQSIASLE  480
FCPSERVMLT TSSEWGEMMT KLSVPKEWKE WQIYALLFCL FMASVVAAYF FFENSDSFWR  540
LPMGKDQKRP KISLFGDSST PSEDHSSLSL MKRQATVFKK ARELSVLCAI EVCVICYGAD  600
GTLKTYSEER EKVEAIARRY AALSETKRRK RSVDLHEFLA KSNKKKLVRP RRVSKFPVWD  660
PRFDNYSGAQ VTGLVQSLER NLTRLQDRFR AVEEQRKMNQ GPSASSSTTT NTINQYLLPQ  720
QQQPNQFSMF LFNHENGNVS QIPLGLMNQG QSLMAPIPPE LLMIHLNADV GNYNLGSLGV  780
QGAFGPPLYD LSQPLFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	87	RKKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in Pi uptake by facilitating the trafficking of PHT1-1/PHT1;1 from the endoplasmic reticulum to the plasma membrane. {ECO:0000269\|PubMed:16284308}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g026430.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Pi starvation. {ECO:0000269\|PubMed:16284308}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117697	0.0	AK117697.1 Arabidopsis thaliana At3g52190 mRNA for unknown protein, complete cds, clone: RAFL17-37-B05.
GenBank	BT028915	0.0	BT028915.1 Arabidopsis thaliana unknown protein (At3g52190) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010515673.1	0.0	PREDICTED: SEC12-like protein 1
Swissprot	Q8GYE0	0.0	PHF1_ARATH; SEC12-like protein 1
TrEMBL	R0HIR0	0.0	R0HIR0_9BRAS; Uncharacterized protein
STRING	XP_010515673.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	3e-68	AGAMOUS-like 103

Publications ? help Back to Top
Dunkley TP,Watson R,Griffin JL,Dupree P,Lilley KS Localization of organelle proteins by isotope tagging (LOPIT). Mol. Cell Proteomics, 2004. 3(11): p. 1128-34 [PMID:15295017] Franco-Zorrilla JM,Martín AC,Leyva A,Paz-Ares J Interaction between phosphate-starvation, sugar, and cytokinin signaling in Arabidopsis and the roles of cytokinin receptors CRE1/AHK4 and AHK3. Plant Physiol., 2005. 138(2): p. 847-57 [PMID:15923327] Niittylä T, et al. Similar protein phosphatases control starch metabolism in plants and glycogen metabolism in mammals. J. Biol. Chem., 2006. 281(17): p. 11815-8 [PMID:16513634] Kerk D, et al. A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccharide starch. Plant J., 2006. 46(3): p. 400-13 [PMID:16623901] Catarecha P, et al. A mutant of the Arabidopsis phosphate transporter PHT1;1 displays enhanced arsenic accumulation. Plant Cell, 2007. 19(3): p. 1123-33 [PMID:17400898] Marmagne A, et al. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Mol. Cell Proteomics, 2007. 6(11): p. 1980-96 [PMID:17644812] Kant S,Peng M,Rothstein SJ Genetic regulation by NLA and microRNA827 for maintaining nitrate-dependent phosphate homeostasis in arabidopsis. PLoS Genet., 2011. 7(3): p. e1002021 [PMID:21455488] Bayle V, et al. Arabidopsis thaliana high-affinity phosphate transporters exhibit multiple levels of posttranslational regulation. Plant Cell, 2011. 23(4): p. 1523-35 [PMID:21521698] Chen J, et al. OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice. Plant Physiol., 2011. 157(1): p. 269-78 [PMID:21753117] Huang TK, et al. Identification of downstream components of ubiquitin-conjugating enzyme PHOSPHATE2 by quantitative membrane proteomics in Arabidopsis roots. Plant Cell, 2013. 25(10): p. 4044-60 [PMID:24122829] Jost R, et al. Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite. J. Exp. Bot., 2015. 66(9): p. 2501-14 [PMID:25697796] Uno H,Tanaka-Takada N,Sato R,Maeshima M Enhancement of cell wall protein SRPP expression during emergent root hair development in Arabidopsis. Plant Signal Behav, 2017. 12(10): p. e1368940 [PMID:28837399]