PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g027800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YB
Protein Properties Length: 214aa    MW: 23660.7 Da    PI: 5.4038
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g027800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.71.5e-5764161198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimk+ lP n+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy+eplkvyl++yre+eg
  Csa06g027800.1  64 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLMRYREMEG 158
                     69********************************************************************************************* PP

           NF-YB  96 ekk 98 
                     ++k
  Csa06g027800.1 159 DTK 161
                     975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.6E-5462179IPR009072Histone-fold
SuperFamilySSF471132.17E-4067172IPR009072Histone-fold
PfamPF008083.8E-2770134IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.9E-2198116No hitNo description
PROSITE patternPS006850101117IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.9E-21117135No hitNo description
PRINTSPR006155.9E-21136154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
GSDQSLSSLL RLLLQSTFLF LSLPLPLFFE FFFRFRVSEM AESQTGGGGS HESGGDQSPR  60
SLNVREQDRF LPIANISRIM KRGLPLNGKI AKDAKETMQE CVSEFISFVT SEASDKCQRE  120
KRKTINGDDL LWAMATLGFE DYIEPLKVYL MRYREMEGDT KGSGKGGESS GKRDGQPSQV  180
SQFSQLPQQG SFPQGPYGNS QASNMMVQMP GTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4664155192Transcription factor HapC (Eurofung)
4g92_B1e-4664155192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g027800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1768270.0AK176827.1 Arabidopsis thaliana mRNA for transcription factor NF-Y, CCAAT-binding - like protein, complete cds, clone: RAFL25-38-H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515824.11e-126PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2
SwissprotQ67XJ21e-112NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A178VNV11e-110A0A178VNV1_ARATH; NF-YB10
STRINGXP_010504090.11e-113(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-95nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]