PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g028260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 394aa    MW: 44161.4 Da    PI: 9.5249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g028260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.5e-09308357147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ I ++     ++Rt  ++k++w ++
   Csa06g028260.1 308 RRPFTVSEVEALVQAVERLGTGRWRDIKNHAFdhaNHRTYVDLKDKWKTL 357
                      679****************************99**9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.29E-5169240IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.906.4E-4172238No hitNo description
PROSITE profilePS500538.851173237IPR000626Ubiquitin domain
CDDcd017690.00258177237No hitNo description
PROSITE profilePS5129416.413303362IPR017930Myb domain
SMARTSM007178.5E-9307360IPR001005SANT/Myb domain
PfamPF002491.4E-6308357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-12308358IPR009057Homeodomain-like
CDDcd116601.51E-18309359No hitNo description
SuperFamilySSF466891.64E-16309390IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MMECGVDAYQ LPVVPRANRS PRGRRLKPIR KQRSDIEVLA QVGGQLSGEC KNRVAIGSLA  60
HETNETKDDF VVNNLLETME VEVKPQPDLE KPSNNVLLSK DWLALGPSMS SSQITQEENF  120
DSSSKIDGKR KMCNMKERGL CSSQESQDMY PLKKRKLFYQ NHRSDTHEAP CTVKFGIKSL  180
KISELLVDVP ESATVGSLKL AVLEAVTRIL KDDLDIGVLL RGKTIDDDSK TLRQIGIPQD  240
ADDNLSSLGF MVEPHKSETT SVTTLTTVSP ETRRLRVRGS VDSTETVAAK PVRMKPASQP  300
EMVQRRIRRP FTVSEVEALV QAVERLGTGR WRDIKNHAFD HANHRTYVDL KDKWKTLVHT  360
AKISARQRRG EPVPQDLLDR VLAAHAFWSY QTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-492913931102Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g028260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026861e-92CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102100.10.0PREDICTED: telomere repeat-binding protein 6-like
SwissprotQ9M3470.0TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLD7LUM40.0D7LUM4_ARALL; Predicted protein
STRINGXP_010515880.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15921911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.10.0TRF-like 4