PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g029270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 415aa    MW: 45798.4 Da    PI: 8.2679
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g029270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.4e-18295328134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  Csa06g029270.1 295 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 328
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.3E-16289339IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.53289325IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-14293352No hitNo description
Gene3DG3DSA:3.30.50.103.8E-14293326IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-13294341No hitNo description
PfamPF003205.8E-16295328IPR000679Zinc finger, GATA-type
PROSITE patternPS003440295320IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
SITLHFSPLL LLFFSFLSNL YLSFSLSLLI FSNLIPFLSL SLFSYDPHST KNRGCSNNCK  60
KKMIGQSFPE DLDCGNFFDN MDDLMDFPGG DIDVGFGIGD SDSFPTIWTS HQDTWPAASD  120
PLFSSNTTTN SDSSPELYVP FEDIVKVDGP PSESLVEKKE DSFSTHTDSS SSHSQFRSSS  180
PVSVLESSSS SSQTTNTTSL VLPGKHGRPR TKRPRPPVQD KDRVKDINNV CGADSRLIIR  240
IPKQFLSDHN KMINKKKKKK KAKVTSSSSS SGIDLEVNGN NVDSYSSELH PVRKCMHCEV  300
TKTPQWRLGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FTPALHSNSH KKVAEMRSKR  360
CSDAASPTFT PALHSNSHKK VAEMRSKRCS DGSYITEEND LQELIPNNAY IGVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211215KRPRP
2254260KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g029270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4121070.0AF412107.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
GenBankAK3175030.0AK317503.1 Arabidopsis thaliana AT3G54810 mRNA, complete cds, clone: RAFL23-14-K23.
GenBankAY0780290.0AY078029.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516023.10.0PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV301e-169GATA8_ARATH; GATA transcription factor 8
TrEMBLD7LUX81e-168D7LUX8_ARALL; GATA transcription factor
STRINGXP_010516023.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-122GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]