PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g031560.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 344aa MW: 37558.6 Da PI: 9.3864

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g031560.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.3	2.8e-07	236	257	5	26
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r++r++kNRe+A rsR+RK+ Csa06g031560.1 236 RRQKRMIKNRESAARSRARKQV 257 79******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-10	229	256	No hit	No description
CDD	cd14707	1.34E-16	236	318	No hit	No description
PROSITE pattern	PS00036	0	239	254	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-10	294	316	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MFGHSTLEKR GIVKEAKSQS LNRQGSLYSL TLDEVQNHLG SPGKALGSMN LDELLKSVCS 60 VEANQPSSMA LNGAAAAQEG LSRQGSLTLP RDLSKKTVDE VWKDIQQNKN GGNAHERRDK 120 QPTLGEMTLE DLLLKAGVVT ETIPGSNHDG PGVPVGGGGS AGSGAGLGQN ITQVGPWVQY 180 HQLPSMPQPQ TFMPYPVSDM QAMVSQSSLM GGLSDTQTPG RKRVASGEVV EKTVERRQKR 240 MIKNRESAAR SRARKQVRNN FCNYQDVVVV ISLVKFCSFS FALCVPTLDI DEQAYTHELE 300 IKVSRLEEEN ERLRKQKEVE RILPSAPPPD PKRQLRRTSS APF*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MFGHSTLEKR GIVKEAKSQS LNRQGSLYSL TLDEVQNHLG SPGKALGSMN LDELLKSVCS  60
VEANQPSSMA LNGAAAAQEG LSRQGSLTLP RDLSKKTVDE VWKDIQQNKN GGNAHERRDK  120
QPTLGEMTLE DLLLKAGVVT ETIPGSNHDG PGVPVGGGGS AGSGAGLGQN ITQVGPWVQY  180
HQLPSMPQPQ TFMPYPVSDM QAMVSQSSLM GGLSDTQTPG RKRVASGEVV EKTVERRQKR  240
MIKNRESAAR SRARKQVRNN FCNYQDVVVV ISLVKFCSFS FALCVPTLDI DEQAYTHELE  300
IKVSRLEEEN ERLRKQKEVE RILPSAPPPD PKRQLRRTSS APF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g031560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL390921	0.0	AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516284.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	0.0	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A178VIK4	0.0	A0A178VIK4_ARATH; DPBF3
STRING	XP_010427523.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	0.0	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]