PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g033320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 322aa    MW: 35990.9 Da    PI: 5.3025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g033320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-202677156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g+
  Csa06g033320.1 26 CQYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAALKLYGH 77
                    68*****999.**********965...5*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.35E-322686No hitNo description
PfamPF008475.1E-142677IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-302785IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-212785IPR016177DNA-binding domain
PROSITE profilePS5103223.0642784IPR001471AP2/ERF domain
SMARTSM003801.5E-362790IPR001471AP2/ERF domain
PRINTSPR003674.1E-102839IPR001471AP2/ERF domain
PRINTSPR003674.1E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDEA ALKLYGHEAY LNLPHLQRNT RPSLSNSQRF KWVPSRKFIS MFPSCGMLNV  120
NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS LLDEKTSCKG ETNNMFEEEL  180
KKTGLLSQSY SSSSSSTESK TNTSLLDEKT SKGETNNMFE GGDQKKPEID LTEFLQQLGI  240
LKDESHAEAS EVADCHSPPP WNEQDETGSP FGAQNFSWDT LIEMPRSETA TMQFDSSDFG  300
SYDFEDGVSF PSIWDYCGSL D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-192784260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g033320.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272170.0AK227217.1 Arabidopsis thaliana mRNA for AP2 transcription factor - like protein, complete cds, clone: RAFL09-96-P04.
GenBankAL0496600.0AL049660.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8.
GenBankAL1332480.0AL133248.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8H10.
GenBankAY0872430.0AY087243.1 Arabidopsis thaliana clone 332 mRNA, complete sequence.
GenBankBT0289450.0BT028945.1 Arabidopsis thaliana At3g57600 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102037.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX51e-175DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLR0FPV41e-177R0FPV4_9BRAS; Uncharacterized protein
STRINGXP_010516379.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-157ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]