PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g035480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 276aa    MW: 30681.7 Da    PI: 4.8857
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g035480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.2e-2970128259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY  +Hnh+
  Csa06g035480.1  70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 128
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3061130IPR003657WRKY domain
PROSITE profilePS5081131.50264130IPR003657WRKY domain
SuperFamilySSF1182902.48E-2565130IPR003657WRKY domain
SMARTSM007746.4E-3469129IPR003657WRKY domain
PfamPF031061.1E-2471128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MHRRGAIQES DDEEDETYND VVPESPSSCE DTKISKPTPK KRRNVEKRVV SVPIADVEGS  60
KSRGEVYPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS RVDPSKLMIT  120
YACDHNHPFP SSAANNKSHH HRSSVVLKTA KKEEEYEEEE EEEELTVAAA EEPPVGLDLS  180
HVDSPLLLGG CYSEIGEFGW FYDASISSSS GGSSNFLDVT LERGFSVSRE EDESLFGDLG  240
DLPDCASVFR RGTVSTEEQH RRCDFGAIPF CDSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2047131680Disease resistance protein RRS1
5w3x_D2e-2047131680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g035480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211560.0AF421156.1 Arabidopsis thaliana WRKY transcription factor 69 (WRKY69) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516530.10.0PREDICTED: probable WRKY transcription factor 69 isoform X2
SwissprotQ93WV51e-176WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A178V7K81e-171A0A178V7K8_ARATH; WRKY69
STRINGXP_010427779.11e-180(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124781930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-170WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]