PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g037310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 556aa MW: 60102.4 Da PI: 6.5801

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g037310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77.7	1.3e-24	75	122	2	48
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvv 48 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++v Csa06g037310.1 75 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNIV 122 699**********************998*************997 PP
2	WRKY	97.3	9.8e-31	342	400	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Csa06g037310.1 342 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 400 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-23	68	122	IPR003657	WRKY domain
PROSITE profile	PS50811	25.878	69	122	IPR003657	WRKY domain
SuperFamily	SSF118290	1.11E-19	72	122	IPR003657	WRKY domain
SMART	SM00774	1.3E-24	74	125	IPR003657	WRKY domain
Pfam	PF03106	2.8E-19	76	121	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.9E-31	335	402	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	336	402	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-26	339	402	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	341	401	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	343	400	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MCSVFELLNM DNFQGDLTDV VRGIGSGHVS SPGPPEGPTP SSMSRPPTKS QTKKVVCIPA 60 PAAMNSRSSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN 120 IVFELLNMDN FQGDLTDVVR GIGSGHVSSP GPPEGPTPSS MSRPPTSDLH VEFPTAAASV 180 SCLTNPFGDP FVSMTDPLLH LAANFGFLSG AGDNESNNSF AVLPKGFEDV DQITSQCSAF 240 PRIRISQSNI TQDASTCNSP AIAVSNAPTS PWGMIRVDAT NSPRNCLLVD NSNNMSSSSQ 300 IQISSSPQNL GIKRRKSQTK KVVCIPAPAA MNSRSSGEVV PSDLWAWRKY GQKPIKGSPY 360 PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRSSSSSSS 420 YLSSKSSTAT AATTTSPSSR FSQNNNNKDE HNKSHLPSSS TPPPYAAAGV KEEKVEERHD 480 NMEFDNDVED TYRPELLPEF QHQPEDFFAN LDELEGDSLN ILLSHSSGGG NMDNTTTIPD 540 VFSDFFDDDD SSRSL*

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MCSVFELLNM DNFQGDLTDV VRGIGSGHVS SPGPPEGPTP SSMSRPPTKS QTKKVVCIPA  60
PAAMNSRSSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN  120
IVFELLNMDN FQGDLTDVVR GIGSGHVSSP GPPEGPTPSS MSRPPTSDLH VEFPTAAASV  180
SCLTNPFGDP FVSMTDPLLH LAANFGFLSG AGDNESNNSF AVLPKGFEDV DQITSQCSAF  240
PRIRISQSNI TQDASTCNSP AIAVSNAPTS PWGMIRVDAT NSPRNCLLVD NSNNMSSSSQ  300
IQISSSPQNL GIKRRKSQTK KVVCIPAPAA MNSRSSGEVV PSDLWAWRKY GQKPIKGSPY  360
PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRSSSSSSS  420
YLSSKSSTAT AATTTSPSSR FSQNNNNKDE HNKSHLPSSS TPPPYAAAGV KEEKVEERHD  480
NMEFDNDVED TYRPELLPEF QHQPEDFFAN LDELEGDSLN ILLSHSSGGG NMDNTTTIPD  540
VFSDFFDDDD SSRSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	48	403	1	80	Disease resistance protein RRS1
5w3x_D	2e-25	48	403	1	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g037310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF404863	0.0	AF404863.1 Arabidopsis thaliana WRKY transcription factor 35 (WRKY35) mRNA, complete cds.
GenBank	BT029239	0.0	BT029239.1 Arabidopsis thaliana At2g34830 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504968.1	0.0	PREDICTED: probable WRKY transcription factor 35
Swissprot	O64747	0.0	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	R0HCF3	0.0	R0HCF3_9BRAS; Uncharacterized protein
STRING	XP_010504968.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	0.0	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]