PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g038040.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BBR-BPC

Protein Properties

Length: 247aa MW: 27069.1 Da PI: 10.7725

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g038040.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	265.4	3.1e-81	47	246	97	301
GAGA_bind 97 vgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaek 191 ++ ++++t+ id +q +q ++ + ++ + ++p++ + e+ ++k + +++ pk+ k k ++kk+++s+k++k+ s +++k+ek Csa06g038040.1 47 HSHIAVPKTTGIDLSQV---SQANPAEGVMVPQSRSFHPPTTIDYRNGVETVEQK-STNQSPPKALKPKTPRKKRSASNKSKKTLSI-PETKREK 136 44567888888987777...44444333366777777777665555544444443.4555667777777777777888888888886.699** PP GAGA_bind 192 ksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLk 286 k++d++++ s+D+s++P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL++La+eGy+ls+pvDLk Csa06g038040.1 137 KNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLAGEGYSLSHPVDLK 231 ******************************************************************************************* PP GAGA_bind 287 dhWAkHGtnkfvtir 301 +hWA+HGtnkfvt + Csa06g038040.1 232 NHWARHGTNKFVTFK 246 ***********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.1E-98	17	246	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.6E-69	74	246	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
ERQRERVISP LKLAIKMNPF PSQNLMLSAT NANKDAALLI SNAHWFHSHI AVPKTTGIDL 60 SQVSQANPAE GVMVPQSRSF HPPTTIDYRN GVETVEQKST NQSPPKALKP KTPRKKRSAS 120 NKSKKTLSIP ETKREKKNLD INIDISSFDT SGVPPPVCSC TGVSRVCYKW GMGGWQSSCC 180 TISISTYPLP MSTTRPGARL AGRKMSNGAY VKLLARLAGE GYSLSHPVDL KNHWARHGTN 240 KFVTFK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g038040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU089961	0.0	EU089961.1 Arabidopsis arenosa GAGA-binding transcriptional activator (BBR/BPC7) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516733.1	1e-172	PREDICTED: protein BASIC PENTACYSTEINE7
Swissprot	O82286	1e-139	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	A0A178W000	1e-145	A0A178W000_ARATH; BPC7
STRING	XP_010516733.1	1e-172	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13674	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.1	1e-141	basic pentacysteine 7