PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g038200.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 325aa MW: 37080.4 Da PI: 9.9237

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g038200.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.3	7.3e-17	22	101	2	72
trihelix 2 WtkqevlaLiearremeer.lrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+l+Liea++ eer +rr++ +++ +W+++ +++++rg++r+++qC++kw+nl + ykki+e e++r Csa06g038200.1 22 WTVSETLVLIEAKKMEEERrVRRSEkkpenrnkSMELRWKWIEEYCWRRGCQRNQNQCNDKWDNLMRGYKKIREYERSRI 101 **********99555440444424445555599***************************************9983 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.143	14	87	IPR017877	Myb-like domain
Pfam	PF13837	3.4E-12	21	105	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MAEPSGGGAR EMVMREYRKG NWTVSETLVL IEAKKMEEER RVRRSEKKPE NRNKSMELRW 60 KWIEEYCWRR GCQRNQNQCN DKWDNLMRGY KKIREYERSR IESSFNTGSS SSRPASYWKM 120 EKSERKERSL PSNMLSRIYD ALAELVEKKT LPYGNGGQIL RVCQGFVAPM MAQPMHQIPT 180 TIVLSLQSPP PQQPLVLSHP PPPQPPPFTF HAEPIQPTVD TSAAKRRRTT TPGETTTAQG 240 ESEDAEVMVG AAISRSALVI AQMIKQSEER QEMRHKEVMR LQERRLKMEE SKADINRQCM 300 SGLVDAINQL ATSILALASS SSLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g038200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516756.1	0.0	PREDICTED: uncharacterized protein LOC104792327
Refseq	XP_010516759.1	0.0	PREDICTED: uncharacterized protein LOC104792327
TrEMBL	R0FXE5	1e-155	R0FXE5_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010516756.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-123	Trihelix family protein