PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g038270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 304aa    MW: 32732.7 Da    PI: 5.1001
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g038270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-174594255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Csa06g038270.1 45 TFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 94
                    59****998.**********854...6**********************99887 PP
2AP224.56.9e-081742012855
             AP2  28 rkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + r++lg+f tae+Aa+a++ a+++++g
  Csa06g038270.1 174 KSRIWLGTFSTAEMAARAHDVAALAIKG 201
                     589********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-2145103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-3245103IPR001471AP2/ERF domain
PROSITE profilePS5103222.57645102IPR001471AP2/ERF domain
SMARTSM003801.1E-3945108IPR001471AP2/ERF domain
CDDcd000181.09E-3346104No hitNo description
PRINTSPR003673.8E-104657IPR001471AP2/ERF domain
PfamPF008474.4E-114694IPR001471AP2/ERF domain
PRINTSPR003673.8E-106884IPR001471AP2/ERF domain
PROSITE profilePS5103213.129132209IPR001471AP2/ERF domain
SMARTSM003801.9E-11171215IPR001471AP2/ERF domain
CDDcd000182.25E-18172211No hitNo description
SuperFamilySSF541711.11E-10173210IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-17173210IPR001471AP2/ERF domain
PfamPF008473.3E-4173201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MERDDDCRRF QDSPAQKTER RVKNYPKKKR SVKDDEKVVV SKHPTFRGVR MRQWGKWVSE  60
IREPKKKSRI WLGTFSTAEM AARAHDVAAL AIKGGSAHLN FPELAYHLPR PASADPKDIQ  120
AAAAAAAAAV AIDMEVETSS PSPSPTVTET SSPGTTAISD DAFSDLPDLL LDKKSRIWLG  180
TFSTAEMAAR AHDVAALAIK GGSAHLNFPE LAYQLPRPAS ADPKDIQAAA AAAAAAVAID  240
MEVETSSPSP SPTVTETSSP GMTAISDDAF SDLPDLLLDV NHKIDGFWES FPDDEEPFLS  300
QSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1639102872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g038270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0060681e-165AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.
GenBankAY5608451e-165AY560845.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g35700) mRNA, complete cds.
GenBankBT0257541e-165BT025754.1 Arabidopsis thaliana At2g35700 mRNA, complete cds.
GenBankCP0026851e-165CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466001e-165DQ446600.1 Arabidopsis thaliana clone pENTR221-At2g35700 AP2 domain-containing transcription factor (At2g35700) mRNA, complete cds.
GenBankDQ6530421e-165DQ653042.1 Arabidopsis thaliana clone 0000016552_0000011552 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516772.11e-113PREDICTED: ethylene-responsive transcription factor ERF038
SwissprotQ9ZQP32e-91ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLD7LIJ52e-94D7LIJ5_ARALL; Uncharacterized protein
STRINGXP_010516772.11e-113(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.14e-66ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]