PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g038560.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 260aa MW: 28814.1 Da PI: 6.094

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g038560.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.3	9.3e-07	2	23	33	54
HHHHCTS-HHHHHHHHHHHHHH CS Homeobox 33 LAkklgLterqVkvWFqNrRak 54 LAk++gLt +qV++WF N R + Csa06g038560.1 2 LAKQTGLTRSQVSNWFINARVR 23 9*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-14	1	34	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-9	1	34	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.171	1	27	IPR001356	Homeobox domain
Pfam	PF05920	9.7E-9	1	23	IPR008422	Homeobox KN domain
CDD	cd00086	1.98E-7	2	27	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYMEEMKEQ GKNMGSMEKN PLDQSNEDSA 60 SKSTSNQEKS PMADTYHMNP NHNGDLEGVT GMQGSPKRLR TSEETMMQPI NADFSSNEKL 120 TMKILEERQG IRSDGGYPFM GNFGQYQMDE MSRFDVVSDQ ELMAQRYSGN NNGVSLTLGL 180 PHCDSLSSTH HQGFMQTHHG NPIGRRVKIG ETEEYGAAAI NGGGSATNAH SSAAAAAAYN 240 GMNIQNQKRY VAQLLPDFVA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g038560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK227272	0.0	AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20.
GenBank	AY072175	0.0	AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBank	AY096548	0.0	AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBank	AY099854	0.0	AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBank	BT008422	0.0	BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010509532.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_010516801.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_019101291.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-163	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	R0HRR2	1e-165	R0HRR2_9BRAS; Uncharacterized protein
STRING	XP_010509532.1	0.0	(Camelina sativa)
STRING	XP_010516801.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21794	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-156	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]