PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g039600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 733aa    MW: 80963.4 Da    PI: 6.409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g039600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-084890347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   Csa06g039600.1 48 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 90
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-104095IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-54393IPR009057Homeodomain-like
PROSITE profilePS5129313.524495IPR017884SANT domain
SMARTSM007175.1E-64593IPR001005SANT/Myb domain
CDDcd001671.19E-54891No hitNo description
PfamPF002493.1E-64890IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MQAEKNPEGR PIDEGHISNQ NSNPNLLSSA SISVSQFPAK KPTRQWAAWT HQEEESFFTA  60
LRQVGKNFEK ITSRVQSKNK DQVRHYYYRL VRRMNKLLGP ELSLDAKNPK DTNAAMLRWW  120
SLLEKYSCKA SKLHLKPRRF KLFLEALEHQ LLKDRRKSIR KRACQGENFS SASLGNISSQ  180
SRERGLDNRP FKLILSDGQN VKKLGSGRAS TKHGESLGVN LGDEKEDTAF GRGGRQRRKQ  240
GYKKWEKAAI DGVSLVADAA EHLERTSIDK DMDDQEDLGS TRYITGKSPL SLCSSGDVPL  300
SDANMQFSAK LKLQLFPIDE CTRRSLEMDK HNPHLELTLS NRKKISSVLE HLNRKWGSSS  360
CATGELMLFP YNARKETITC HQRWTHDSFL SAAEVHSMVG SPSVFRLRYG WFVHDASGSF  420
ISQVPTSDLC PSLEDDMNVD GVNEVNMLLT ESGPLSVHST AKQPTSVEPS LGLVCASGET  480
HDRPAEYRDD YEPASPTISP LEHLISGNAQ SAGEWADSLT NISIGDLLSD VPDDIDSDGG  540
NPPATEGSHC VLRDVSFASD SFDAAIAAHI LRHQNKSSAP LPLTSGSSSL WDDEETRDAF  600
SFQNNRLEDS SKLANVASPR GVGRVNGKPS QLVEALSVDE KLPDHGEPME EGPTDPHTMD  660
SPGKTHCGLA DIYWPDSLGP LDLDIRSSKY TDDLILSESL GGLSRLIATS LDAFQNCSLF  720
GLDNKKDKSN MV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g039600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516931.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X4
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLD7LJ990.0D7LJ99_ARALL; Tsl-kinase interacting protein 1
STRINGXP_010516928.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1