PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g039680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 404aa    MW: 46073 Da    PI: 6.5187
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g039680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81.1e-07288336348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       WT +E   lvd++  +G g W+ I + +    ++Rt+ +++++w+++l
   Csa06g039680.1 288 VWTVDEVMTLVDGISHFGVGKWTDIKNNFFhsaTHRTPVDIRDKWRNLL 336
                      5**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.747281340IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-12281343IPR009057Homeodomain-like
SMARTSM007171.2E-8285338IPR001005SANT/Myb domain
CDDcd116608.57E-20287337No hitNo description
SuperFamilySSF466891.44E-16288351IPR009057Homeodomain-like
PfamPF139219.0E-7289343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDRTPGFPAV GFKCDSVDEN VCLSNEYKMS DTKRFVMEPT HDHNTSVNSF LGLGMETMGL  60
SSTMDEFSHG FDFSFLPDYG GLDSCTTQDV EAGLKFEILD GFLDEVEEVE DIYASHDLSS  120
TSNHILPETE DKKKVSELDG GPYGLMNFPS ESYSPGISGS TGLSEWSKET VPHAEHQNVS  180
SEKLKDILDS NESEDDKKPL STFIGSWVKR GRNRKKNLPN TAYRRLDSSG ERMSYDFRPR  240
KEPMKKYMHT STENTFRDDQ LTSSESEDDI SVTKTSRTRS DRRKQQRVWT VDEVMTLVDG  300
ISHFGVGKWT DIKNNFFHSA THRTPVDIRD KWRNLLKASY NDKHNDGEAE ERRKSLARPM  360
PKDILHRVRE LASRHPYPFS KSSCFVYDSS RSQSTSKKKK KRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-13274368590Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g039680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516937.20.0PREDICTED: uncharacterized protein LOC104792482 isoform X1
RefseqXP_010516938.20.0PREDICTED: uncharacterized protein LOC104792482 isoform X2
RefseqXP_010516939.10.0PREDICTED: uncharacterized protein LOC104792482 isoform X4
RefseqXP_010516940.10.0PREDICTED: uncharacterized protein LOC104792482 isoform X4
TrEMBLA0A178VNS90.0A0A178VNS9_ARATH; TRFL8
TrEMBLF4IPY70.0F4IPY7_ARATH; TRF-like 8
STRINGXP_010516937.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.14e-19TRF-like 3