PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g041140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 257aa    MW: 28736.9 Da    PI: 5.6094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g041140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-1966124155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr++  +g+WvAeIr+p++ +g    ++kr +lg+f ta eAa a+++a+ +++g
  Csa06g041140.1  66 CRFRGVRQRV-WGKWVAEIREPVNhRGanstRSKRLWLGTFATAAEAALAYDRAASAMYG 124
                     689*****99.**********999977877666**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.65E-2166133No hitNo description
PfamPF008471.4E-1366124IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1967133IPR016177DNA-binding domain
PROSITE profilePS5103221.85267132IPR001471AP2/ERF domain
SMARTSM003803.4E-3167138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-2767133IPR001471AP2/ERF domain
PRINTSPR003673.5E-96879IPR001471AP2/ERF domain
PRINTSPR003673.5E-998114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEKEESGSKQ RYSRRRRRAV EPVEATLQRW GKEEDGEGLE RVRRVQAKGS KKGCMRGKGG  60
PENPVCRFRG VRQRVWGKWV AEIREPVNHR GANSTRSKRL WLGTFATAAE AALAYDRAAS  120
AMYGRYARLN FPEGLLENGP GGEMKKSDGA GSSGSYWFEP DNVSEAPDGV LETKDEKDYL  180
LYDNGIELGQ DKIENLDLTD TKMVESMVYK NPAVKAEEGY SFDRFELDSG LLYNEPGGSS  240
YYQGGGSDSY LEFFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1568132663ATERF1
3gcc_A5e-1568132663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g041140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517125.10.0PREDICTED: dehydration-responsive element-binding protein 2E-like
SwissprotO809171e-103DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLR0FYX81e-150R0FYX8_9BRAS; Uncharacterized protein
STRINGXP_010517125.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.12e-85ERF family protein
Publications ? help Back to Top
  1. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]