PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g045050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 414aa    MW: 46345.9 Da    PI: 6.9692
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g045050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-10195252562
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     kr++r + NR +A rs +RK  +i eLe+kv++L++e ++L  +l+  +     l se
  Csa06g045050.1 195 KRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 252
                     9*****************************************9999887776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.3E-17191255IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.622193256IPR004827Basic-leucine zipper domain
PfamPF001701.7E-9195253IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.7E-10195250No hitNo description
SuperFamilySSF579592.65E-10195246No hitNo description
CDDcd147031.44E-20196245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
HLRTQNVKSE SLSFAVRFRQ IDRGREGRET QRERERDTRK DDDPGMEDPS NPKSNQSNLP  60
QCLPLASAPT SAPFRGSYHR RAHSEVQFRL PEDLDLSEPF GGFDELGSED DLFCSYMDIE  120
KLGSGSGSAS DSAGPSARRS DNPFSAENGG AEAGNSRPRH RHSLSVDGSS TLESIEAKKA  180
MAPDKLAELW VVDPKRAKRI IANRQSAARS KERKARYILE LERKVQTLQT EATTLSAQLS  240
LFQRDTTGLS SENTELKLRL QVMEQQAKLR DALNEQLKKE VERLKFATGE VSPADAYNLG  300
MAHMQYQHQP QQSYYQHHQQ QTDAQNLQQM THQFHLFQPN NNQNQNTSSR QNPPTNHQLM  360
HHATSNAPAQ SHSYSETMHE DPLGRLQGLD ISSCGRGSNF GRSDTVSESS STM*
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g045050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0742690.0AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517502.10.0PREDICTED: transcription factor RF2b-like
SwissprotO228730.0BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A178VZR10.0A0A178VZR1_ARATH; Uncharacterized protein
STRINGXP_010517502.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40422757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.10.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]