PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g046960.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 263aa MW: 29540.7 Da PI: 8.965

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g046960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	53.1	6.9e-17	192	240	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe kv+ Le+eN++L+ +l+e +k Csa06g046960.1 192 RRQKRMIKNRESAARSRARKQAYTHELEIKVERLEEENEKLR-KLKEVEK 240 79****************************************.7777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-14	185	234	No hit	No description
SMART	SM00338	7.4E-12	188	244	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.369	190	234	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.12E-22	192	237	No hit	No description
Pfam	PF00170	8.9E-14	192	234	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.0E-10	192	234	No hit	No description
PROSITE pattern	PS00036	0	195	210	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MGSIRGNIEE PISQSLTRQN SLYSLKLHEV QTHLGSSGKP LGSMNLDELL KTVLSPEEEG 60 LVRQGSLTLP RDLSKKTVDE VWRDIQLDKN GNTTTTTTAA HKQPTLGEIT LEDLLLKAGV 120 VTETIAPQEN VVNIASHGQW VEYHQPGQQQ GFMPYPVCEM QDIVMMGGLS DTPKAHGRKR 180 VAGDIVEKTV ERRQKRMIKN RESAARSRAR KQAYTHELEI KVERLEEENE KLRKLKEVEK 240 ILPSEPPPDP KWKLRRTNSA SL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g046960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF334209	0.0	AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds.
GenBank	AY084668	0.0	AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence.
GenBank	BT025175	0.0	BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010517591.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3
Swissprot	Q9C5Q2	1e-172	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	R0HR06	1e-175	R0HR06_9BRAS; Uncharacterized protein
STRING	XP_010517591.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	1e-152	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]