PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g047710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 241aa    MW: 26574.9 Da    PI: 9.1757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g047710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024174196223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp Cg  Fs+  +L+ H  + H
  Csa06g047710.1 174 VCPQCGAKFSSVTSLVEHVEKtH 196
                     6*****************99888 PP
2zf-C2H220.21.5e-06212234223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C++ F+++ +L++Hi + H
  Csa06g047710.1 212 VCPKCSRGFRDPVDLVNHIERdH 234
                     7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.106.3E-84096IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.47E-85199No hitNo description
PROSITE profilePS510398.2356105IPR000058Zinc finger, AN1-type
PfamPF014282.5E-85998IPR000058Zinc finger, AN1-type
SMARTSM001540.006859100IPR000058Zinc finger, AN1-type
SMARTSM003550.01173196IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45173201IPR007087Zinc finger, C2H2
SuperFamilySSF576677.12E-5174230No hitNo description
PROSITE patternPS000280175196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-4177196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.9211234IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954211239IPR007087Zinc finger, C2H2
PROSITE patternPS000280213234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKHTCPKGDR EDVTVVICPL CAKGVRLNPN EDPNITWEKH VNTDCDPSNY EKATKKKKCP  60
VPRCKEQLTF SNTIKCRDCN IDHCLKHRFG PDHSCPGPRK LPFMGFLSSS SSSSSRKEAK  120
TTRPNKASTS SSSSTSRWSN LLSSAEAGIS RLGNDISQKL QFSSSSSNDG IIEVCPQCGA  180
KFSSVTSLVE HVEKTHERNK KQNHGSKNTV DVCPKCSRGF RDPVDLVNHI ERDHRGTSKT  240
*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g047710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517671.11e-175PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-145SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A178VRV31e-142A0A178VRV3_ARATH; Uncharacterized protein
STRINGXP_010517671.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-139C2H2 family protein