PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g048330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 221aa    MW: 23861.8 Da    PI: 8.2446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g048330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-07189215430
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                     +h+ +Er RR++iN ++  L+el+P +
  Csa06g048330.1 189 NHSLAERARREKINARMKLLQELVPGC 215
                     79***********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.29E-5183217No hitNo description
SuperFamilySSF474596.41E-8183217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.077185220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-8188215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-5189215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDLTQGFGAR SGIGPVTGLE SLNFSDEFRQ LVTAMPPEDT GGSFTALLEM PVTQAMELLH  60
FADSPSSQAN ITKLAGDNIA PPHPFGTLTF PSNSLLLDRA ARFSLIATEQ NGYFSSGDTP  120
SSSANLDGGV KAEPAETDSI SENQNSKHNK RKEREKKGKS SMKKTKSSVE ADKLPYVHVR  180
ARRGQATDNH SLAERARREK INARMKLLQE LVPGCDKVCL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g048330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1755843e-79AK175584.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL22-03-O22.
GenBankAK1760193e-79AK176019.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL22-72-P11.
GenBankAK1766343e-79AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBankAY0654113e-79AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBankAY0965213e-79AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517746.11e-159PREDICTED: transcription factor bHLH48-like
SwissprotQ8VZ021e-101BH048_ARATH; Transcription factor bHLH48
TrEMBLR0FXN31e-117R0FXN3_9BRAS; Uncharacterized protein
STRINGXP_010517746.11e-158(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.21e-101bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]